Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a06f
         (606 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    25   0.50 
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    23   1.5  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   6.1  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   6.1  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   8.1  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 25.0 bits (52), Expect = 0.50
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -3

Query: 328 ASTAPGGTSPFVENCQANMDGTSTSNWSFRTSSPPKEI*H 209
           ++ APG + P V +C      ++  N+S  +S+    + H
Sbjct: 124 SAAAPGPSDPSVSSCHQGFSSSTWCNYSAYSSASRHHVDH 163


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 174 CHLRGELFPRRSHHRQHRY 118
           C+   E FP RSH +Q  Y
Sbjct: 309 CYKLMEKFPERSHEQQELY 327


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 373 LTLPK*SFSPSAVEPASTAP 314
           LT+PK   +PS ++P    P
Sbjct: 146 LTMPKYEPNPSIIDPGPALP 165


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 373 LTLPK*SFSPSAVEPASTAP 314
           LT+PK   +PS ++P    P
Sbjct: 146 LTMPKYEPNPSIIDPGPALP 165


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 183 PERCHLRGELFPRRSH 136
           P RCH   +  P RSH
Sbjct: 346 PHRCHGNLQSCPTRSH 361


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,595
Number of Sequences: 336
Number of extensions: 3570
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)