Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a06f
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54237-1|CAA90987.2|  445|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    28   4.5  
U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...    28   4.5  
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra...    28   4.5  
U38937-1|AAA93079.1|  441|Caenorhabditis elegans LIN-1 protein.        27   7.9  
U38935-1|AAB60254.1|  441|Caenorhabditis elegans LIN-1 protein.        27   7.9  
AF067606-1|AAC17530.3|  441|Caenorhabditis elegans Abnormal cell...    27   7.9  

>Z54237-1|CAA90987.2|  445|Caenorhabditis elegans Hypothetical
           protein T11B7.1 protein.
          Length = 445

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -1

Query: 573 TTYGLIDIMH*IIELIEVNFQSRFSITFSTLVPSIHILRSSFLRHQTGNSNMR 415
           T  G+IDI+H  I  ++V  QS+ +I FS  +P + +++      Q  + N +
Sbjct: 27  TVQGIIDILHDTISYVQVEKQSK-TINFS--IPHLQMIKEQLESIQLKDKNYK 76


>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
            ZC101.2f protein.
          Length = 2389

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 346  PSAVEPA-STAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 224
            P A  P  S APG  + F  NC A+ D  +   W FR  + P
Sbjct: 1702 PVATPPLLSVAPGSPARF--NCVAHSDTPARIRWGFREENGP 1741


>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
            ZC101.2e protein.
          Length = 3375

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 346  PSAVEPA-STAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 224
            P A  P  S APG  + F  NC A+ D  +   W FR  + P
Sbjct: 1795 PVATPPLLSVAPGSPARF--NCVAHSDTPARIRWGFREENGP 1834


>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
            ZC101.2a protein.
          Length = 2482

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 346  PSAVEPA-STAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 224
            P A  P  S APG  + F  NC A+ D  +   W FR  + P
Sbjct: 1795 PVATPPLLSVAPGSPARF--NCVAHSDTPARIRWGFREENGP 1834


>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
            ZC101.2f protein.
          Length = 2389

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 346  PSAVEPA-STAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 224
            P A  P  S APG  + F  NC A+ D  +   W FR  + P
Sbjct: 1702 PVATPPLLSVAPGSPARF--NCVAHSDTPARIRWGFREENGP 1741


>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
            ZC101.2e protein.
          Length = 3375

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 346  PSAVEPA-STAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 224
            P A  P  S APG  + F  NC A+ D  +   W FR  + P
Sbjct: 1795 PVATPPLLSVAPGSPARF--NCVAHSDTPARIRWGFREENGP 1834


>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
            ZC101.2a protein.
          Length = 2482

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 346  PSAVEPA-STAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 224
            P A  P  S APG  + F  NC A+ D  +   W FR  + P
Sbjct: 1795 PVATPPLLSVAPGSPARF--NCVAHSDTPARIRWGFREENGP 1834


>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 26  KRRHNRHARHIPLGPR-LLKPAQHPTRCPQGRY 121
           +RR NR A+ + + PR +    +   RCPQ RY
Sbjct: 34  RRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRY 66


>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 26  KRRHNRHARHIPLGPR-LLKPAQHPTRCPQGRY 121
           +RR NR A+ + + PR +    +   RCPQ RY
Sbjct: 34  RRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRY 66


>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
            proteoglycan protein.
          Length = 2481

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 346  PSAVEPA-STAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 224
            P A  P  S APG  + F  NC A+ D  +   W FR  + P
Sbjct: 1794 PVATPPLLSVAPGSPARF--NCVAHSDTPARIRWGFREENGP 1833


>U38937-1|AAA93079.1|  441|Caenorhabditis elegans LIN-1 protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 349 SPSAVEPASTAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 224
           SPS+   +S  P  +SP  E+ Q      S S  S  T+ PP
Sbjct: 231 SPSSSVASSATPSTSSPVDESRQCRKRSLSPSTTSSTTAPPP 272


>U38935-1|AAB60254.1|  441|Caenorhabditis elegans LIN-1 protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 349 SPSAVEPASTAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 224
           SPS+   +S  P  +SP  E+ Q      S S  S  T+ PP
Sbjct: 231 SPSSSVASSATPSTSSPVDESRQCRKRSLSPSTTSSTTAPPP 272


>AF067606-1|AAC17530.3|  441|Caenorhabditis elegans Abnormal cell
           lineage protein 1 protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 349 SPSAVEPASTAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 224
           SPS+   +S  P  +SP  E+ Q      S S  S  T+ PP
Sbjct: 231 SPSSSVASSATPSTSSPVDESRQCRKRSLSPSTTSSTTAPPP 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,169,642
Number of Sequences: 27780
Number of extensions: 351370
Number of successful extensions: 1018
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)