Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a06f
         (606 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.8  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   3.1  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   5.4  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   5.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.4  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   9.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +3

Query: 531 AQLFNALYLLNR 566
           AQLFN L++LNR
Sbjct: 400 AQLFNGLFVLNR 411


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 194 NDFGRNDVTFVVSSSRVD 141
           NDF  NDV F +  + VD
Sbjct: 394 NDFNFNDVNFRILGANVD 411


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -3

Query: 313 GGTSPFVENCQANMDGTSTSNWSFRTSSPP 224
           GG  P +    +   GTS S W   T S P
Sbjct: 71  GGEQPTLRLLCSIAGGTSESQWEDVTGSTP 100


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 470 FIFCGAPFFAIKRVIATC 417
           FI C  PFF +  V A C
Sbjct: 18  FILCWLPFFTMYLVRAFC 35


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 470 FIFCGAPFFAIKRVIATC 417
           FI C  PFF +  V A C
Sbjct: 466 FILCWLPFFTMYLVRAFC 483


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 108 GHLVGCCAGLSKR 70
           GHL+  C G+ KR
Sbjct: 25  GHLIYKCGGIDKR 37


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 92  HPTRCPQGR 118
           HP+RC QG+
Sbjct: 17  HPSRCTQGK 25


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 92  HPTRCPQGR 118
           HP+RC QG+
Sbjct: 17  HPSRCTQGK 25


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 108 GHLVGCCAGLSKR 70
           GHL+  C G+ KR
Sbjct: 25  GHLIYKCGGIDKR 37


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 177 RCHLRGELFPR 145
           RCH+ GE  PR
Sbjct: 422 RCHVAGEPLPR 432


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,099
Number of Sequences: 438
Number of extensions: 4240
Number of successful extensions: 25
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)