Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a03r
         (765 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       22   6.2  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    22   6.2  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   6.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.2  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    21   8.2  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    21   8.2  

>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 637 HVANHEHRRRLFEVATSKFGGVDIL 563
           H + H+H     +++  K GG D+L
Sbjct: 101 HSSIHQHHHDPMKMSLDKSGGSDLL 125


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 637 HVANHEHRRRLFEVATSKFGGVDIL 563
           H + H+H     +++  K GG D+L
Sbjct: 252 HSSIHQHHHDPMKMSLDKSGGSDLL 276


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 637 HVANHEHRRRLFEVATSKFGGVDIL 563
           H + H+H     +++  K GG D+L
Sbjct: 311 HSSIHQHHHDPMKMSLDKSGGSDLL 335


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +3

Query: 39   YFRWTLATTQSRAGAPPATTTVSP 110
            Y  W  A T    G P    TVSP
Sbjct: 1278 YEFWVTAATTIGEGQPSKKVTVSP 1301


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 472 SSWLLAKEAYPELVKR 425
           S W++A +A PE+ KR
Sbjct: 38  SRWMVAGKADPEMPKR 53


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 472 SSWLLAKEAYPELVKR 425
           S W++A +A PE+ KR
Sbjct: 38  SRWMVAGKADPEMPKR 53


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,830
Number of Sequences: 336
Number of extensions: 3941
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)