Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a03r
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    46   5e-07
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.4  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   5.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.5  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 45.6 bits (103), Expect = 5e-07
 Identities = 51/208 (24%), Positives = 85/208 (40%), Gaps = 11/208 (5%)
 Frame = -3

Query: 748 LGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVCHVANHEHRRRLFEVATSKFGGVD 569
           L  +G  V+  + +   +   V+ L+S+   +  + C ++N     ++ E      G +D
Sbjct: 27  LVGKGMKVIGIAPQVDKMKTLVEELKSKPGKLVPLQCDLSNQNDILKVIEWVEKNLGAID 86

Query: 568 ILXXXXXXXXXXXSILDTDEQV-WDKIFDVNVKSSWLLAKEAYPELVKRG--GGSIVFI- 401
           IL             L  DE + W KIFD+N+     + +E    + K+G   G IV I 
Sbjct: 87  ILINNATINIDVT--LQNDEVLDWKKIFDINLLGLTCMIQEVLKLMKKKGINNGIIVNIN 144

Query: 400 --SSIAAYQPTEPLGAYGVSKTTLLGLTKAIANETV--HENIRVNCVAPGIVVTKFAS-- 239
             S +          AY  SK  L  LT  + +E      NI+V  ++P +V T   +  
Sbjct: 145 DASGLNLLPMNRNRPAYLASKCALTTLTDCLRSELAQCESNIKVISISPDLVETDMTAQW 204

Query: 238 AITNSEAGAE-KSLSNVPLKRFGRPEEI 158
              NS    + K +SN  L     P+ +
Sbjct: 205 LKENSRLALKPKDVSNCVLFALQTPDNV 232


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -1

Query: 756 LRGWEVKVLP*SSAAGKRATLGKLCRASEARALQWKESSVT 634
           L+G +    P S      A + KLCR + A  L +++  ++
Sbjct: 578 LKGIDAIEFPRSITRNATALIKKLCRDNPAERLGYQKGGIS 618


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 364 GAYGVSKTTLLGLTKAIANETVHENI 287
           G Y +S    LGLT+  A + +H+ I
Sbjct: 320 GIYDISNKRRLGLTEYQAVKEMHDGI 345


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 414 LPPPLLTSSGYASLANSQELFTLTSNILSQTCS 512
           L  P+L+SS   +   +    T+  N L+ TCS
Sbjct: 318 LEKPVLSSSTTTTSPMTSTKSTIVRNHLNSTCS 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,411
Number of Sequences: 438
Number of extensions: 4750
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)