Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a03f
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    48   5e-08
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   2.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   2.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   4.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.1  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    21   9.4  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 48.4 bits (110), Expect = 5e-08
 Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 3/139 (2%)
 Frame = +3

Query: 186 KVAIVTASTEGIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVCHVAN 365
           +VA+VT +  GIG  + + L  +G  V+  + +   +   V+ L+S+   +  + C ++N
Sbjct: 8   EVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMKTLVEELKSKPGKLVPLQCDLSN 67

Query: 366 HEHRRRLFEVATSKFGGVDILXXXXXXXXXXXXILDTDEQV-WDKIFDVNVKSSWLLAKE 542
                ++ E      G +DIL             L  DE + W KIFD+N+     + +E
Sbjct: 68  QNDILKVIEWVEKNLGAIDILINNATINIDVT--LQNDEVLDWKKIFDINLLGLTCMIQE 125

Query: 543 AYPELVKRG--GGSIVFIS 593
               + K+G   G IV I+
Sbjct: 126 VLKLMKKKGINNGIIVNIN 144


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 224 PNSFSRCCYNSHLPTEPSALN 162
           P SF+  C+++ L T PS  N
Sbjct: 71  PGSFTAGCHSNLLSTSPSGQN 91


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 224 PNSFSRCCYNSHLPTEPSALN 162
           P SF+  C+++ L T PS  N
Sbjct: 71  PGSFTAGCHSNLLSTSPSGQN 91


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +1

Query: 235 LRGWEVKVLP*SSAAGKRATLGKLCRASEARALQWKESSVT 357
           L+G +    P S      A + KLCR + A  L +++  ++
Sbjct: 578 LKGIDAIEFPRSITRNATALIKKLCRDNPAERLGYQKGGIS 618


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 577 LPPPLLTSSGYASLANSQELFTLTSNILSQTCS 479
           L  P+L+SS   +   +    T+  N L+ TCS
Sbjct: 318 LEKPVLSSSTTTTSPMTSTKSTIVRNHLNSTCS 350


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 102 RTS*YHYNNKTKLVCYYYFR 43
           R S YHYN  T   C  +FR
Sbjct: 193 RASGYHYNALTCEGCKGFFR 212


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 182 WEGGYCNSI 208
           W GG+C+SI
Sbjct: 9   WVGGFCHSI 17


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,761
Number of Sequences: 438
Number of extensions: 3746
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)