Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a02r
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12260.1 68416.m01531 complex 1 family protein / LVR family p...    58   2e-09
At2g47220.1 68415.m05897 3' exoribonuclease family domain 1 prot...    29   1.7  
At4g32300.1 68417.m04596 lectin protein kinase family protein co...    28   4.0  
At1g13350.1 68414.m01550 protein kinase family protein contains ...    28   4.0  
At5g22400.1 68418.m02613 rac GTPase activating protein, putative...    27   5.3  
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica...    27   5.3  
At3g25840.1 68416.m03219 protein kinase family protein contains ...    27   7.0  
At5g38565.1 68418.m04663 F-box family protein contains F-box dom...    27   9.3  
At2g03590.1 68415.m00319 expressed protein similar to SP|Q41706 ...    27   9.3  

>At3g12260.1 68416.m01531 complex 1 family protein / LVR family
           protein contains Pfam PF05347: Complex 1 protein (LYR
           family)
          Length = 133

 Score = 58.4 bits (135), Expect = 2e-09
 Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
 Frame = -1

Query: 379 PVLSSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPK--SEAQCREKLKELFIKNKHVTDI 206
           P  S++  EAR RV   ++A  R IP I+  Y++    + +Q R  +      N H+TD 
Sbjct: 13  PPNSANLTEARRRVFDFFRAACRSIPTIMDIYNLQDVVAPSQLRYAISAQIRNNAHITDP 72

Query: 205 RVIDMLVIKGQMELKESVNIWKQKGHIMAYF 113
           +VID+L+ KG  EL + V+  KQ+ HI+  +
Sbjct: 73  KVIDLLIFKGMEELTDIVDHAKQRHHIIGQY 103


>At2g47220.1 68415.m05897 3' exoribonuclease family domain 1
           protein-related similar to  polynucleotide phosphorylase
           [Pisum sativum] GI:2286200, polyribonucleotide
           phophorylase [Spinacia oleracea] GI:1924972; contains
           Pfam profiles PF05266: Protein of unknown function
           (DUF724), weak hit to PF01138: 3' exoribonuclease
           family, domain 1
          Length = 469

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -1

Query: 229 KNKHVTDIRVIDMLVIKGQMELKESVNIWKQKGHIMAYFKPTEEPKPKNFLSKFFSG 59
           K+  VT + +     I GQ ELK  +N WK  G +++     +  K    +S  FSG
Sbjct: 100 KDHEVTFLCLPAASYITGQEELKACLNDWKSNGLVVSGLVRDQREKLIQEVSSTFSG 156


>At4g32300.1 68417.m04596 lectin protein kinase family protein
           contains Pfam domains, PF01453: Lectin (probable mannose
           binding) and PF00069: Protein kinase domain
          Length = 821

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 482 LFSLKDFCVGSSHRLIHFENVCKAGNKSWYKNRK 381
           L  L+ FC   +HRL+ +E + K   + W   +K
Sbjct: 548 LVRLRGFCAEGAHRLLAYEFLSKGSLERWIFRKK 581


>At1g13350.1 68414.m01550 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069 (likely that this
           cDNA contains a single unspliced intron. Putative intron
           removed in this gene model.)
          Length = 761

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
 Frame = -1

Query: 349 RNRVLSLYKAWYRQIPYIVKDY--DIPKSEAQCREKLKELFIKNKHVTDIRVIDMLVIKG 176
           RN +  ++++ +  +  IVK Y  +I    +  R    +LFI  KH+ +  V+   +   
Sbjct: 518 RNHLCLVFESLHLNLREIVKKYGRNIGIQLSGVRVYATQLFISLKHLKNCGVLHCDIKPD 577

Query: 175 QMELKESVNIWKQKGHIMAYFKPTEEPKPKNFLSKFFSGNE 53
            M + E  N  K      A F  T E  P   +S+F+   E
Sbjct: 578 NMLVNEGRNTLKLCDFGSAMFAGTNEVTP-YLVSRFYRAPE 617


>At5g22400.1 68418.m02613 rac GTPase activating protein, putative
           similar to rac GTPase activating protein 1 [Lotus
           japonicus] GI:3695059; contains Pfam profile PF00620:
           RhoGAP domain
          Length = 466

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 331 LYKAWYRQIPYIVKDYDIPKSEAQCR 254
           L KAW+R++P  V D   P+   QC+
Sbjct: 234 LIKAWFRELPTSVLDSLSPEQVMQCQ 259


>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|Q03468 Excision
           repair protein ERCC-6 (Cockayne syndrome protein CSB)
           {Homo sapiens}; contains PFam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 1187

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 178 GQMEL-KESVNIWKQKGHIMAYFKPTEEPKPKNFLSKFFSGNE 53
           G+M++  E + +WKQ+GH +  F  T++    + L  F   NE
Sbjct: 727 GKMKVVAEVLKVWKQQGHRVLLFSQTQQ--MLDILESFLVANE 767


>At3g25840.1 68416.m03219 protein kinase family protein contains Pfam
            profile: PF00069 eukaryotic protein kinase domain
          Length = 935

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
 Frame = -1

Query: 349  RNRVLSLYKAWYRQIPYIVKDY--DIPKSEAQCREKLKELFIKNKHVTDIRVIDMLVIKG 176
            RN +  ++++ +  +  ++K +  +I    +  R   K+LFI  KH+ +  V+   +   
Sbjct: 693  RNHLCLVFESLHLNLREVLKKFGRNIGLQLSAVRAYSKQLFIALKHLKNCGVLHCDIKPD 752

Query: 175  QMELKESVNIWKQKGHIMAYFKPTEEPKPKNFLSKFFSGNE*FIYLLCTY 26
             M + E  N+ K      A F    E  P   +S+F+   E  I L  TY
Sbjct: 753  NMLVNEGKNVLKLCDFGNAMFAGKNEVTP-YLVSRFYRSPE--IILGLTY 799


>At5g38565.1 68418.m04663 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 415

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 256 REKLKELFIKNKHVTDIRVIDMLVIKGQMELKESVNIWKQ 137
           REK K L    K   ++RV+++  ++G + L   V+ W Q
Sbjct: 227 REKSKILGQLLKDSPNLRVLNIFKVQGHVTLSTGVDCWNQ 266


>At2g03590.1 68415.m00319 expressed protein similar to SP|Q41706 A3
           protein (unknown function) {Vigna unguiculata}
          Length = 390

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 63  EKNFERKFFGLGSSVGLK*AIMCPFCFHMFTDSFN 167
           EK    K FG  + +GL        CF +F+ +FN
Sbjct: 209 EKQRAIKVFGKSTIIGLVITFFAGICFSLFSPAFN 243


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,344,166
Number of Sequences: 28952
Number of extensions: 205392
Number of successful extensions: 578
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)