Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10a02f
(544 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1446 + 26584117-26584329,26585799-26585981 53 2e-07
01_06_0930 + 33134385-33138257 35 0.048
08_02_1449 - 27174451-27178005 30 1.0
04_03_0995 + 21521877-21521977,21522152-21522217,21523630-215236... 30 1.0
12_02_0615 + 21242819-21243201,21244510-21244630,21244728-212448... 28 4.2
12_02_0514 - 19912066-19913346 28 4.2
02_01_0401 + 2927581-2927669,2927795-2927921,2928354-2928437,292... 28 4.2
07_03_1204 + 24855052-24855210,24855411-24855974,24856157-248562... 28 5.5
03_02_0013 - 4921925-4922077,4922176-4922252,4922360-4922445,492... 28 5.5
12_01_0407 - 3219980-3221278 27 7.3
12_01_0356 - 2707820-2708395,2708475-2708705,2709071-2709190,270... 27 9.7
11_01_0332 + 2483743-2484131,2486062-2486182,2486307-2486426,248... 27 9.7
01_03_0145 - 13116302-13116958,13117365-13117430,13117786-131180... 27 9.7
>07_03_1446 + 26584117-26584329,26585799-26585981
Length = 131
Score = 52.8 bits (121), Expect = 2e-07
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Frame = +1
Query: 121 PVLSSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPK--SEAQCREKLKELFIKNKHVTDI 294
P S+S EAR+RV ++ R IP I++ Y++ + +Q R + + KN+ VT+
Sbjct: 11 PPNSASLEEARHRVFDFFRQACRAIPSIMEIYNLDDVVTPSQLRSTIAKEIRKNQGVTNP 70
Query: 295 RVIDMLVIKGQMELKESVNIWKQKGHIMAYF 387
+VIDML+ KG EL KQ+ H++ +
Sbjct: 71 KVIDMLLFKGMEELGNITEHAKQRHHVIGQY 101
>01_06_0930 + 33134385-33138257
Length = 1290
Score = 34.7 bits (76), Expect = 0.048
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Frame = +1
Query: 151 RNRVLSLYKAWYRQIPYIVKDYDIPKSEAQCREK-----LKELFIKNKHVTDIRVIDMLV 315
RNR+ LY+A QIPYI K + + C +K L++L NK ++RV+++
Sbjct: 673 RNRMYKLYRAALPQIPYIGKLSLLQDIDGFCVQKQKGYELRQLRDMNKLGGNLRVVNLEN 732
Query: 316 IKGQMELKES 345
+ G+ E ES
Sbjct: 733 VTGKDEASES 742
>08_02_1449 - 27174451-27178005
Length = 1184
Score = 30.3 bits (65), Expect = 1.0
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Frame = +1
Query: 154 NRVLSLYKAWYRQIPYIVKDYD-----IPKSEAQCREKLKELFIKNKHVTDIRVIDMLVI 318
N +LS+ K YR +P +K PK R+KL +L+I N + + ++D L
Sbjct: 402 NEILSILKLSYRHLPLEMKQCFAFCAIFPKDYQMERDKLVQLWIANNFIQEEGMMD-LEE 460
Query: 319 KGQMELKESV 348
+GQ E V
Sbjct: 461 RGQFVFNELV 470
>04_03_0995 +
21521877-21521977,21522152-21522217,21523630-21523696,
21523959-21524041,21524318-21524359,21524614-21524733,
21524806-21524869,21525028-21525113,21525217-21525299,
21525994-21526070,21526549-21526567,21526568-21526661,
21527042-21527087
Length = 315
Score = 30.3 bits (65), Expect = 1.0
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Frame = +1
Query: 124 VLSSSHAEARNRVLSLYKAWYRQIPY----IVKDYDIPKSEAQCREKLKELFIKNKHVTD 291
VLS+ H + R Y W+R P+ ++ DY++ QC L N D
Sbjct: 64 VLSTLHLQLRVEYTLYYNIWFRSYPFSICGMLWDYELKHKIFQCNYSLYAFISLNLKYND 123
Query: 292 IRVIDMLVIK 321
I + V+K
Sbjct: 124 IAKHALDVVK 133
>12_02_0615 +
21242819-21243201,21244510-21244630,21244728-21244847,
21245015-21245245,21245365-21245862
Length = 450
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 166 SLYKAWYRQIPYIVKDYDIPKSEAQCREK 252
SL KAW+R++P V D P+ QC +
Sbjct: 205 SLIKAWFRELPEGVLDSLSPEQVLQCNSE 233
>12_02_0514 - 19912066-19913346
Length = 426
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 126 YWFYGFCTNFYCLPC-RHFRSESICDSIQHKNLLMKIN 16
YW GFC ++ + C RH ++ C S+ LL+ +
Sbjct: 374 YWRNGFCCKYFAICCMRHCKNPLTCLSLLAAFLLLSFS 411
>02_01_0401 +
2927581-2927669,2927795-2927921,2928354-2928437,
2928546-2928662,2928754-2928945,2929031-2929234,
2929322-2929809,2930429-2930528,2930686-2930745,
2931007-2931126,2931407-2931751
Length = 641
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = -1
Query: 250 SLDIVLLTWECHNPSLYR---GSDDTMLCKDSELYSELQHETTI 128
SL TWE H SL G ++M +LYSEL++E +
Sbjct: 193 SLSTCTCTWEEHISSLRDLKFGGSESMRSTQQDLYSELEYEQDV 236
>07_03_1204 +
24855052-24855210,24855411-24855974,24856157-24856225,
24856304-24856426,24856733-24856864,24857143-24857266,
24857547-24857614,24857849-24857991,24858615-24858722,
24858826-24858901,24859442-24859578,24859660-24859819,
24859901-24860080,24860159-24860275,24860540-24860695,
24861209-24861379,24861479-24861591,24861669-24861792,
24861961-24862056,24862139-24862201,24862299-24862364
Length = 982
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 184 YRQIPYIVKDYDIPKSEAQCREKLKELFIKNKHVTDIRVI 303
++ + Y+V++ D+ A CR+ + + K + TDI V+
Sbjct: 729 HQGVNYLVEELDLSSRTAFCRKADLKYYTKTRDYTDINVL 768
>03_02_0013 -
4921925-4922077,4922176-4922252,4922360-4922445,
4922527-4922720,4922829-4923115,4923219-4923345,
4923586-4923816,4923982-4924047,4925300-4925474,
4925563-4925770,4925886-4925934,4926249-4926578
Length = 660
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/37 (32%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Frame = +1
Query: 259 ELFIKNKHVTDIRVIDMLVIK---GQMELKESVNIWK 360
EL +K+ + T I V+ +++ G +++KE+++IWK
Sbjct: 427 ELLMKSLYYTPIAVLASIILSALPGLIDIKEALSIWK 463
>12_01_0407 - 3219980-3221278
Length = 432
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +1
Query: 130 SSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPKSEAQCREKLKELFIKNKHVTDI 294
+ S A RN + K ++ I ++ + S QC +K +L + K +TDI
Sbjct: 130 ADSGAGKRNSAIMQKKGKWKAISKVMGERGCSVSPQQCEDKFNDLNKRYKRLTDI 184
>12_01_0356 -
2707820-2708395,2708475-2708705,2709071-2709190,
2709281-2709401,2711588-2712027
Length = 495
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 169 LYKAWYRQIPYIVKDYDIPKSEAQCREK 252
L KAW+R++P V D P+ QC+ +
Sbjct: 225 LIKAWFRELPSGVLDSIPPEQVMQCQSE 252
>11_01_0332 +
2483743-2484131,2486062-2486182,2486307-2486426,
2486897-2487127,2487205-2487783
Length = 479
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 169 LYKAWYRQIPYIVKDYDIPKSEAQCREK 252
L KAW+R++P V D P+ QC+ +
Sbjct: 208 LIKAWFRELPSGVLDSIPPEQVMQCQSE 235
>01_03_0145 -
13116302-13116958,13117365-13117430,13117786-13118065,
13118283-13119028
Length = 582
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 480 FKICTK*INKSFVSRKEFRKEIFWFRFFCW 391
F++C+K + +S K F + F RFF W
Sbjct: 92 FQVCSKQVGFHILSFKNFISKDFHARFFLW 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,510,841
Number of Sequences: 37544
Number of extensions: 238718
Number of successful extensions: 576
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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