Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10a02f
(544 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5628| Best HMM Match : Complex1_LYR (HMM E-Value=3e-13) 83 1e-16
SB_47166| Best HMM Match : DivIVA (HMM E-Value=0.23) 31 0.61
SB_23940| Best HMM Match : MuDR (HMM E-Value=0.24) 29 1.9
SB_9704| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_45987| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_26027| Best HMM Match : DUF164 (HMM E-Value=0.1) 29 3.2
SB_32331| Best HMM Match : DivIVA (HMM E-Value=0.86) 28 4.3
SB_23275| Best HMM Match : IncA (HMM E-Value=0.43) 28 5.7
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_6740| Best HMM Match : RVT_1 (HMM E-Value=4.5e-22) 28 5.7
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_37642| Best HMM Match : fn3 (HMM E-Value=0) 27 9.9
>SB_5628| Best HMM Match : Complex1_LYR (HMM E-Value=3e-13)
Length = 487
Score = 83.0 bits (196), Expect = 1e-16
Identities = 40/83 (48%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
Frame = +1
Query: 76 MSARQAIK-VGTKTVKPVLSSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPKSEAQCREK 252
M+A+Q + VG KP+LS++ AEAR RV +LY+AW+R+IP+ V+ + + S R K
Sbjct: 1 MAAKQVAQTVGRAVAKPLLSTTPAEARRRVFNLYRAWWREIPHTVQAFALDISVKSGRNK 60
Query: 253 LKELFIKNKHVTDIRVIDMLVIK 321
++E F+KN +V D+R+IDMLVIK
Sbjct: 61 VREEFMKNANVKDLRIIDMLVIK 83
>SB_47166| Best HMM Match : DivIVA (HMM E-Value=0.23)
Length = 235
Score = 31.1 bits (67), Expect = 0.61
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Frame = +1
Query: 220 IPKSEAQCREKLKELFIKNKHVTDIRVIDMLVIKGQMELKESVNIWKQKGHIMAYFKPT- 396
+ K+ Q RE + I+ K+ T + I V+ +LKE V W++ + +PT
Sbjct: 146 LDKARTQLREHPFDKDIQRKYETTLAKIKTTVLSAHSQLKEEVMRWEKTFFLRKCTEPTS 205
Query: 397 ----EEPKPKNFLSKFF 435
E+PK K F
Sbjct: 206 DDISEDPKISKVKQKLF 222
>SB_23940| Best HMM Match : MuDR (HMM E-Value=0.24)
Length = 685
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +1
Query: 220 IPKSEAQCREKLKELFIKNKHVTDIRVIDMLVIKGQMELKESVNIWKQKGHIMAYFKPTE 399
+ K+ Q RE + I+ K+ T + I V+ +LKE V W++ + +PT
Sbjct: 597 LDKARTQLREHPFDKDIQRKYETTLAKIKTKVLSAHSQLKEEVMRWEKTFFLRKCTEPTS 656
Query: 400 E 402
+
Sbjct: 657 D 657
>SB_9704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +1
Query: 220 IPKSEAQCREKLKELFIKNKHVTDIRVIDMLVIKGQMELKESVNIWKQKGHIMAYFKPTE 399
+ K+ Q RE + I+ K+ T + I V+ +LKE V W++ + +PT
Sbjct: 50 LDKARTQLREHPFDKDIQRKYETTLAKIKTKVLSAHSQLKEEVMRWEKTFFLRKCTEPTS 109
Query: 400 E 402
+
Sbjct: 110 D 110
>SB_45987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1339
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +1
Query: 220 IPKSEAQCREKLKELFIKNKHVTDIRVIDMLVIKGQMELKESVNIWKQKGHIMAYFKPTE 399
+ K+ Q RE + I+ K+ T + I V+ +LKE V W++ + +PT
Sbjct: 1194 LDKARTQLREHPFDKDIQRKYETTLAKIKTKVLSAHSQLKEEVMRWEKTFFLRKCTEPTS 1253
Query: 400 E 402
+
Sbjct: 1254 D 1254
>SB_26027| Best HMM Match : DUF164 (HMM E-Value=0.1)
Length = 715
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = +1
Query: 241 CREKLKELFIKNKHVTDIRVIDMLVIKGQMELKESVNIWKQKGHIMAYFKPTEEPKPKNF 420
CR++ +E K KH T + V+ VI G ++E + ++Q+ + TE +N
Sbjct: 64 CRQESREFAKKTKHSTRVGVVP--VISG-ARIQEDLKHYQQQTETLESLLATENHNNENL 120
Query: 421 LSK 429
++K
Sbjct: 121 MNK 123
>SB_32331| Best HMM Match : DivIVA (HMM E-Value=0.86)
Length = 888
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = +1
Query: 220 IPKSEAQCREKLKELFIKNKHVTDIRVIDMLVIKGQMELKESVNIWKQKGHIMAYFKPTE 399
+ K+ Q RE + I+ K+ T + + V+ +LKE V W++ + +PT
Sbjct: 767 LDKARTQLREHPFDNDIQRKYETTLARVKTKVLSAHSQLKEEVMRWEKTFFLRKCTEPTS 826
Query: 400 E 402
+
Sbjct: 827 D 827
>SB_23275| Best HMM Match : IncA (HMM E-Value=0.43)
Length = 1176
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 217 DIPKSEAQCREKLKELFIKNKHVTDIR-VIDMLVIKGQMELKESVNIWKQKGHIMAYFK 390
++P+SE +E+L+ + KN+ +++ VID + + Q+E + K + A FK
Sbjct: 266 NLPRSETTNQERLRAIDRKNEELSERNSVIDETLEENQLERENLEERMSLKDRVKAIFK 324
>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1957
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = +1
Query: 103 GTKTVKPVLSSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPKSEAQCREKLKE 261
GT+ ++ +A + + L YR Y+ + YDI K RE + +
Sbjct: 9 GTEVIREDAEKGYARPKRKSLRAMSEKYRSTDYVERFYDIQKDIKFLRETISD 61
>SB_6740| Best HMM Match : RVT_1 (HMM E-Value=4.5e-22)
Length = 884
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 37 FVLDRVTD*FTSKMSARQAIKVGTKTVKPVLSSSHAEARN 156
F L R+T TSK+ +Q G+++V+ SSS ++ N
Sbjct: 640 FTLSRITPSLTSKLDPKQFALAGSQSVQIANSSSACKSPN 679
>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1651
Score = 27.1 bits (57), Expect = 9.9
Identities = 27/108 (25%), Positives = 43/108 (39%)
Frame = +1
Query: 31 KIFVLDRVTD*FTSKMSARQAIKVGTKTVKPVLSSSHAEARNRVLSLYKAWYRQIPYIVK 210
KI D D + M + ++ T TVKPVLS + R +S K
Sbjct: 806 KIVPKDVTEDLVPAAMEPFKPVRFKTVTVKPVLSGILRQLNARNISQTDVTAEVSE--PK 863
Query: 211 DYDIPKSEAQCREKLKELFIKNKHVTDIRVIDMLVIKGQMELKESVNI 354
D IP+ + E +L + VT + M + + +K +V+I
Sbjct: 864 DQSIPRKHVKIVESDADLIQAVELVTSESTVAMAIEENNSRVKLAVDI 911
>SB_37642| Best HMM Match : fn3 (HMM E-Value=0)
Length = 500
Score = 27.1 bits (57), Expect = 9.9
Identities = 23/90 (25%), Positives = 38/90 (42%)
Frame = +1
Query: 79 SARQAIKVGTKTVKPVLSSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPKSEAQCREKLK 258
+ A + T+K S A+N V+ YK +YR I + + Y+I A L
Sbjct: 277 TGEDAYNTSSTTIKVNWGSVPQGAQNGVILGYKVFYRHIDKLSEYYNISVVSAP-EMSLT 335
Query: 259 ELFIKNKHVTDIRVIDMLVIKGQMELKESV 348
L +K + +++ + IKG L V
Sbjct: 336 VLGLKKYGLYEVKAL-AFTIKGDGNLSSPV 364
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,345,583
Number of Sequences: 59808
Number of extensions: 301863
Number of successful extensions: 868
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -