Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a01r
         (737 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.           26   1.4  
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         24   5.6  
CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          23   7.4  

>AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.
          Length = 753

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -3

Query: 627 RKTEFGRAIDCERHRSHHFRYPRAWTRPNLHRKSRRRLHFPNF 499
           ++T  GR     R    H  Y R W  P+LH+   + + F  F
Sbjct: 74  QRTLDGRLQVAGRKGFPHVIYARIWRWPDLHKNELKHVKFCQF 116


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
 Frame = -3

Query: 618 EFGRAIDCERHRSHHFRYPR----AWTRPNLHRKSRRRLHF 508
           E G  I+   H  HH ++P         P++H  +   LH+
Sbjct: 108 EAGMKINLLNHHQHHHQHPHLPHVQQHHPSVHHPAHHPLHY 148


>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 591 RHRSHHFRYPRAWTRPNLHRKSRRR 517
           R R    R P A TRP  HR +RR+
Sbjct: 505 RCRPRARRNPPATTRPVRHRPTRRK 529


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 666,729
Number of Sequences: 2352
Number of extensions: 12872
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 75676146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)