Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a01r
         (737 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M86852-1|AAC12785.1|  305|Homo sapiens peroxisome assembly facto...    30   10.0 
M85038-1|AAA60141.1|  305|Homo sapiens peroxisomal membrane prot...    30   10.0 
BC093043-1|AAH93043.1|  305|Homo sapiens peroxisomal membrane pr...    30   10.0 
BC005375-1|AAH05375.1|  305|Homo sapiens peroxisomal membrane pr...    30   10.0 
BC000661-1|AAH00661.1|  305|Homo sapiens peroxisomal membrane pr...    30   10.0 
AY219181-1|AAO60072.1| 4243|Homo sapiens fibrocystin L protein.        30   10.0 
AF133826-1|AAF97687.1|  305|Homo sapiens 35 kDa peroxisomal memb...    30   10.0 

>M86852-1|AAC12785.1|  305|Homo sapiens peroxisome assembly factor-1
           protein.
          Length = 305

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 370 SLGRVRSTLNFDLKMLKVTSLTTTLLAPSRAKWATVPDAL 489
           S G+V+  +NF + +LK+  L   L+   R K+AT+ + L
Sbjct: 131 SFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERL 170


>M85038-1|AAA60141.1|  305|Homo sapiens peroxisomal membrane protein
           protein.
          Length = 305

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 370 SLGRVRSTLNFDLKMLKVTSLTTTLLAPSRAKWATVPDAL 489
           S G+V+  +NF + +LK+  L   L+   R K+AT+ + L
Sbjct: 131 SFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERL 170


>BC093043-1|AAH93043.1|  305|Homo sapiens peroxisomal membrane
           protein 3, 35kDa (Zellweger syndrome) protein.
          Length = 305

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 370 SLGRVRSTLNFDLKMLKVTSLTTTLLAPSRAKWATVPDAL 489
           S G+V+  +NF + +LK+  L   L+   R K+AT+ + L
Sbjct: 131 SFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERL 170


>BC005375-1|AAH05375.1|  305|Homo sapiens peroxisomal membrane
           protein 3, 35kDa (Zellweger syndrome) protein.
          Length = 305

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 370 SLGRVRSTLNFDLKMLKVTSLTTTLLAPSRAKWATVPDAL 489
           S G+V+  +NF + +LK+  L   L+   R K+AT+ + L
Sbjct: 131 SFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERL 170


>BC000661-1|AAH00661.1|  305|Homo sapiens peroxisomal membrane
           protein 3, 35kDa (Zellweger syndrome) protein.
          Length = 305

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 370 SLGRVRSTLNFDLKMLKVTSLTTTLLAPSRAKWATVPDAL 489
           S G+V+  +NF + +LK+  L   L+   R K+AT+ + L
Sbjct: 131 SFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERL 170


>AY219181-1|AAO60072.1| 4243|Homo sapiens fibrocystin L protein.
          Length = 4243

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
 Frame = -1

Query: 536  IEKAEGDYTFPISDIFSASGTVAHLALEGASNVVVNDVTFNILRSKFSVDLTLPKLSASS 357
            I++   DYT  + +I S +GT A  A E  S V   D++ ++    ++V LT P ++A  
Sbjct: 2040 IDRLRSDYTTLLCEIPSNNGTGAEQACE-VSVVNGKDLSQSMTPFTYAVSLT-PLITA-- 2095

Query: 356  VAVNGEATIFGRELAVASSG-SLVVEDLRL 270
            V+    +T  G  L V  SG S  +ED+ +
Sbjct: 2096 VSPKRGSTAGGTRLTVVGSGFSENMEDVHI 2125


>AF133826-1|AAF97687.1|  305|Homo sapiens 35 kDa peroxisomal
           membrane protein protein.
          Length = 305

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 370 SLGRVRSTLNFDLKMLKVTSLTTTLLAPSRAKWATVPDAL 489
           S G+V+  +NF + +LK+  L   L+   R K+AT+ + L
Sbjct: 131 SFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERL 170


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,317,004
Number of Sequences: 237096
Number of extensions: 1750200
Number of successful extensions: 4136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4131
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8791154398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)