Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a01f
         (591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998...    33   0.17 
03_02_0058 - 5316112-5316418,5316497-5316705,5316773-5316859,531...    32   0.30 
08_02_0423 - 16946435-16946542,16946924-16947045,16947442-169475...    29   3.7  
12_01_0199 - 1467137-1467172,1467302-1467391,1468304-1468396,146...    28   4.8  
11_08_0006 - 27548581-27549177                                         28   4.8  
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365...    28   4.8  
03_03_0282 - 16191487-16191975                                         27   8.5  

>05_05_0030 - 21698625-21698752,21699589-21699627,21699708-21699822,
            21699927-21699992,21701064-21701203,21701424-21701473,
            21701608-21702045,21702757-21702839,21702941-21702977,
            21703366-21703457,21703531-21703615,21703950-21704029,
            21704049-21704105,21704350-21704747,21706322-21707223,
            21707331-21707421,21708123-21710273,21710375-21710813,
            21711180-21711299
          Length = 1836

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = +2

Query: 152  IDRITSGIQERGLDPIYIEKAEGDYTFPISDIFSASGTVAH 274
            + RI+  I+ERG++ +  E+ +G Y+  + ++ ++S   AH
Sbjct: 1346 VQRISHAIRERGMNNVLAERIQGKYSVALGNLMASSIVFAH 1386


>03_02_0058 -
           5316112-5316418,5316497-5316705,5316773-5316859,
           5316945-5317055,5317536-5317643,5319082-5319149,
           5319269-5319320
          Length = 313

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = +2

Query: 140 IVNVIDRITSGIQ-ERGLDPIYIEKAEGDYTFPISDIFSASGTVAHLALEGASNVVVNDV 316
           ++  +  I+  I  +RGL    ++K  G YT  +S ++    T+  + ++  SN+     
Sbjct: 61  VIKAVKNISMQIGGDRGLTSTAVKKG-GLYTLDVSSVYKYKSTLVDVKVDTESNISTTLT 119

Query: 317 TFNILRS-KFSVDLTLPKLSASSV 385
            F++L S K    + LP  ++  V
Sbjct: 120 VFDVLPSTKLVTSVKLPDYNSGKV 143


>08_02_0423 -
           16946435-16946542,16946924-16947045,16947442-16947504,
           16949707-16949844,16950062-16950170,16950610-16950934,
           16952482-16952645
          Length = 342

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -3

Query: 478 CGDQTKVFDNKASTTGYSQFPAKDGGLTVDG---DRRGAELGEG 356
           C    +  D  A +    Q PA+DGG TVD    +R+G  +G+G
Sbjct: 172 CSSHVEKGDKVAVSVAIEQ-PAEDGGWTVDAHHEERKGLYIGQG 214


>12_01_0199 -
           1467137-1467172,1467302-1467391,1468304-1468396,
           1468488-1469515,1470005-1470552,1470656-1470695,
           1473774-1475196
          Length = 1085

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 21/77 (27%), Positives = 32/77 (41%)
 Frame = +2

Query: 251 SASGTVAHLALEGASNVVVNDVTFNILRSKFSVDLTLPKLSASSVAVNGEATIFGRELAV 430
           SAS T A   L  + N+ + D + N+L   F  D     L  +     GEA +   ++  
Sbjct: 130 SASATAARARLHDSGNLAIEDGSGNVLWQSF--DHPTDTLLPTQRIAAGEAMVSADKILA 187

Query: 431 ASSGSLVVEDLRLVSTV 481
           A   S    D  ++S V
Sbjct: 188 AGFYSFRFSDYAMLSLV 204


>11_08_0006 - 27548581-27549177
          Length = 198

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = -3

Query: 433 GYSQFPAKDGGLTVDGDRRGAELGEGKIDAEF*SQNVESDVIDDN--VAGAFESQVG 269
           G  QFP  DGG ++DG   G         +   + N   D   DN   +G  ES VG
Sbjct: 92  GQQQFPGNDGGRSIDGIDEGRVCNRQTQASRSVADNRGDDSRTDNNDDSGGGESNVG 148


>03_05_0432 -
           24231984-24233048,24233391-24235160,24235261-24236582,
           24236668-24237013
          Length = 1500

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = -3

Query: 181 LLDTGSDAIDDVHNQLLDQILSFSLKVNF*GHSSDAGSESNKYKCE 44
           LL+T SDA D   N+L+++ L  +L  +F    +D  SE N  K E
Sbjct: 736 LLNTISDAQDVKQNELVEKSLVVTLLEHFGQEVADLRSERNTLKQE 781


>03_03_0282 - 16191487-16191975
          Length = 162

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -3

Query: 448 KASTTGYSQFPAKDGGLTVDGDRRGAELGEGKIDAEF*SQNVESDVIDDNVAGA 287
           +A TT  ++    D G+   GD  G + G G +DA     +  +D  +D+  GA
Sbjct: 103 RARTTAATEDEDGDRGVADAGDDGGRDAGHGVVDASEDGGHDAADAGEDSGCGA 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,397,187
Number of Sequences: 37544
Number of extensions: 285792
Number of successful extensions: 940
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)