Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10a01f
(591 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M86852-1|AAC12785.1| 305|Homo sapiens peroxisome assembly facto... 30 7.0
M85038-1|AAA60141.1| 305|Homo sapiens peroxisomal membrane prot... 30 7.0
BC093043-1|AAH93043.1| 305|Homo sapiens peroxisomal membrane pr... 30 7.0
BC005375-1|AAH05375.1| 305|Homo sapiens peroxisomal membrane pr... 30 7.0
BC000661-1|AAH00661.1| 305|Homo sapiens peroxisomal membrane pr... 30 7.0
AY219181-1|AAO60072.1| 4243|Homo sapiens fibrocystin L protein. 30 7.0
AF133826-1|AAF97687.1| 305|Homo sapiens 35 kDa peroxisomal memb... 30 7.0
U70136-1|AAB09089.1| 1404|Homo sapiens megakaryocyte stimulating... 29 9.3
AL133553-1|CAC36090.1| 1404|Homo sapiens proteoglycan 4 protein. 29 9.3
AK131434-1|BAD18580.1| 933|Homo sapiens protein ( Homo sapiens ... 29 9.3
>M86852-1|AAC12785.1| 305|Homo sapiens peroxisome assembly factor-1
protein.
Length = 305
Score = 29.9 bits (64), Expect = 7.0
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -1
Query: 369 SLGRVRSTLNFDLKMLKVTSLTTTLLAPSRAKWATVPDAL 250
S G+V+ +NF + +LK+ L L+ R K+AT+ + L
Sbjct: 131 SFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERL 170
>M85038-1|AAA60141.1| 305|Homo sapiens peroxisomal membrane protein
protein.
Length = 305
Score = 29.9 bits (64), Expect = 7.0
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -1
Query: 369 SLGRVRSTLNFDLKMLKVTSLTTTLLAPSRAKWATVPDAL 250
S G+V+ +NF + +LK+ L L+ R K+AT+ + L
Sbjct: 131 SFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERL 170
>BC093043-1|AAH93043.1| 305|Homo sapiens peroxisomal membrane
protein 3, 35kDa (Zellweger syndrome) protein.
Length = 305
Score = 29.9 bits (64), Expect = 7.0
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -1
Query: 369 SLGRVRSTLNFDLKMLKVTSLTTTLLAPSRAKWATVPDAL 250
S G+V+ +NF + +LK+ L L+ R K+AT+ + L
Sbjct: 131 SFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERL 170
>BC005375-1|AAH05375.1| 305|Homo sapiens peroxisomal membrane
protein 3, 35kDa (Zellweger syndrome) protein.
Length = 305
Score = 29.9 bits (64), Expect = 7.0
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -1
Query: 369 SLGRVRSTLNFDLKMLKVTSLTTTLLAPSRAKWATVPDAL 250
S G+V+ +NF + +LK+ L L+ R K+AT+ + L
Sbjct: 131 SFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERL 170
>BC000661-1|AAH00661.1| 305|Homo sapiens peroxisomal membrane
protein 3, 35kDa (Zellweger syndrome) protein.
Length = 305
Score = 29.9 bits (64), Expect = 7.0
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -1
Query: 369 SLGRVRSTLNFDLKMLKVTSLTTTLLAPSRAKWATVPDAL 250
S G+V+ +NF + +LK+ L L+ R K+AT+ + L
Sbjct: 131 SFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERL 170
>AY219181-1|AAO60072.1| 4243|Homo sapiens fibrocystin L protein.
Length = 4243
Score = 29.9 bits (64), Expect = 7.0
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = +2
Query: 203 IEKAEGDYTFPISDIFSASGTVAHLALEGASNVVVNDVTFNILRSKFSVDLTLPKLSASS 382
I++ DYT + +I S +GT A A E S V D++ ++ ++V LT P ++A
Sbjct: 2040 IDRLRSDYTTLLCEIPSNNGTGAEQACE-VSVVNGKDLSQSMTPFTYAVSLT-PLITA-- 2095
Query: 383 VAVNGEATIFGRELAVASSG-SLVVEDLRL 469
V+ +T G L V SG S +ED+ +
Sbjct: 2096 VSPKRGSTAGGTRLTVVGSGFSENMEDVHI 2125
>AF133826-1|AAF97687.1| 305|Homo sapiens 35 kDa peroxisomal
membrane protein protein.
Length = 305
Score = 29.9 bits (64), Expect = 7.0
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -1
Query: 369 SLGRVRSTLNFDLKMLKVTSLTTTLLAPSRAKWATVPDAL 250
S G+V+ +NF + +LK+ L L+ R K+AT+ + L
Sbjct: 131 SFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERL 170
>U70136-1|AAB09089.1| 1404|Homo sapiens megakaryocyte stimulating
factor protein.
Length = 1404
Score = 29.5 bits (63), Expect = 9.3
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Frame = -1
Query: 429 TANSLPKMVASPLTATEEAL------SLGRVRSTLNFDLKMLKVTSLTTTLLAP 286
T + PKM T TE+ + +V ST D K+T+L TT LAP
Sbjct: 930 TTTAAPKMTKETATTTEKTTESKITATTTQVTSTTTQDTTPFKITTLKTTTLAP 983
>AL133553-1|CAC36090.1| 1404|Homo sapiens proteoglycan 4 protein.
Length = 1404
Score = 29.5 bits (63), Expect = 9.3
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Frame = -1
Query: 429 TANSLPKMVASPLTATEEAL------SLGRVRSTLNFDLKMLKVTSLTTTLLAP 286
T + PKM T TE+ + +V ST D K+T+L TT LAP
Sbjct: 930 TTTAAPKMTKETATTTEKTTESKITATTTQVTSTTTQDTTPFKITTLKTTTLAP 983
>AK131434-1|BAD18580.1| 933|Homo sapiens protein ( Homo sapiens
cDNA FLJ16561 fis, clone SYNOV4003981, moderately
similar to Homo sapiens proteoglycan 4, (megakaryocyte
stimulating ).
Length = 933
Score = 29.5 bits (63), Expect = 9.3
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Frame = -1
Query: 429 TANSLPKMVASPLTATEEAL------SLGRVRSTLNFDLKMLKVTSLTTTLLAP 286
T + PKM T TE+ + +V ST D K+T+L TT LAP
Sbjct: 459 TTTAAPKMTKETATTTEKTTESKITATTTQVTSTTTQDTTPFKITTLKTTTLAP 512
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,924,574
Number of Sequences: 237096
Number of extensions: 1499246
Number of successful extensions: 3444
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3443
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6211568660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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