Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_G06
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    27   1.8  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    27   2.4  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    26   5.5  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    25   9.5  

>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 253 LIISMNHLPILCRWLGSNLVYILLIEFPIVQRYLFGRF 140
           LI+++ H+P+   WL    + I L + P+V  +L GR+
Sbjct: 177 LILAVLHIPVALIWLNLEHILIFLHQDPMV-AHLCGRY 213


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
 Frame = +1

Query: 487 EYDIDEVVF-DQESPF---QRVQIVHSKSLGNMLVLDDLQNISEADLIYTE 627
           EY+ D+VVF D + P     RVQ++ S S  + +VL+D +   +   I+T+
Sbjct: 107 EYNTDDVVFYDVDYPETIENRVQMIRSDSFLSSIVLEDKEFDLDGTEIHTK 157


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 269 VPLLPVNNFNEPSSNFMSVARIKFGIYSFNRVSNC 165
           VP LP+   N  S NF S++ I F    F R S C
Sbjct: 296 VPKLPIFYPNSSSPNFFSLSEIPFNRRGF-RYSPC 329


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 436 KRCLFGRYYPSSDGRLLEYDIDEVVFDQESPF 531
           +RCL+G    +    LL YDI + + D+  P+
Sbjct: 120 ERCLYGALNDNIRRMLLSYDITKAI-DESQPY 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,559
Number of Sequences: 5004
Number of extensions: 51199
Number of successful extensions: 159
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)