Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_G06
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-13|CAB60361.2|  314|Caenorhabditis elegans Hypothetical...    36   0.033
AJ306734-1|CAC37332.1|  314|Caenorhabditis elegans spermidine sy...    36   0.033
U21324-9|AAA62560.2|  755|Caenorhabditis elegans Coenzyme q (ubi...    35   0.044
Z37139-4|CAA85488.1|  231|Caenorhabditis elegans Hypothetical pr...    31   0.54 
Z82055-3|CAB04845.1|  385|Caenorhabditis elegans Hypothetical pr...    31   0.94 
Z82055-1|CAB04843.1|  405|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U40953-5|AAB52648.1|  385|Caenorhabditis elegans G protein, alph...    29   3.8  
AY008128-1|AAG32081.1|  385|Caenorhabditis elegans heterotrimeri...    29   3.8  

>AL110485-13|CAB60361.2|  314|Caenorhabditis elegans Hypothetical
           protein Y46G5A.19 protein.
          Length = 314

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +1

Query: 475 GRLLEYDIDEVVFDQESPFQRVQIVHSKSLGNMLVLDDLQNISEAD-LIYTETL 633
           G+     + +V+F ++S +Q V +  S + GN+LVLD +   +E D   Y E L
Sbjct: 45  GQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEML 98


>AJ306734-1|CAC37332.1|  314|Caenorhabditis elegans spermidine
           synthase protein.
          Length = 314

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +1

Query: 475 GRLLEYDIDEVVFDQESPFQRVQIVHSKSLGNMLVLDDLQNISEAD-LIYTETL 633
           G+     + +V+F ++S +Q V +  S + GN+LVLD +   +E D   Y E L
Sbjct: 45  GQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEML 98


>U21324-9|AAA62560.2|  755|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 8 protein.
          Length = 755

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +1

Query: 106 DFSIEAAR-LEDENGQKDIFGQLETLLKEYIPNLILATDIKLEDGSLKLLTGNKGTTVSV 282
           +F I+AAR ++D+N +  IFG  +   K Y P L    ++ LE G++  LT +  ++V  
Sbjct: 249 EFLIKAARSVDDDNAETAIFGTQKAKPKVYRPELPKNFEVNLEMGNVHTLTRSNESSVPA 308

Query: 283 RMFDR 297
               R
Sbjct: 309 TRIGR 313


>Z37139-4|CAA85488.1|  231|Caenorhabditis elegans Hypothetical
           protein C14B1.8 protein.
          Length = 231

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 15/52 (28%), Positives = 30/52 (57%)
 Frame = +1

Query: 493 DIDEVVFDQESPFQRVQIVHSKSLGNMLVLDDLQNISEADLIYTETLMQRNK 648
           DID ++F+  +  Q  ++   K+L   L++DDL+ + + +    +  +QRNK
Sbjct: 128 DIDRIIFEMANTDQEARL-KKKALEMELMMDDLEKMRKEEYQELQLAVQRNK 178


>Z82055-3|CAB04845.1|  385|Caenorhabditis elegans Hypothetical
           protein T26H2.3 protein.
          Length = 385

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +1

Query: 448 FGRYYPSSDGRLLEYDIDEVVFDQESPFQRVQIVHSKSLGNMLVLDDLQNI 600
           + R YP  + R  +   D+ VF+   PF  V  V   S+ N L L  +QN+
Sbjct: 182 YEREYPDEEARRRKASSDKQVFEAIMPFLNVLEVQRYSMKNSLPLAFIQNL 232


>Z82055-1|CAB04843.1|  405|Caenorhabditis elegans Hypothetical
           protein T26H2.1 protein.
          Length = 405

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/66 (24%), Positives = 29/66 (43%)
 Frame = +1

Query: 448 FGRYYPSSDGRLLEYDIDEVVFDQESPFQRVQIVHSKSLGNMLVLDDLQNISEADLIYTE 627
           +GR YP  + R  + + D+++F    P      ++   + N L L  +QN+ +    Y  
Sbjct: 201 YGREYPDEEARRHKANSDKLIFRAIMPVVNALEINENRMENDLPLVFIQNLDKFKSFYIS 260

Query: 628 TLMQRN 645
              Q N
Sbjct: 261 HQYQLN 266


>U40953-5|AAB52648.1|  385|Caenorhabditis elegans G protein, alpha
           subunit protein 5 protein.
          Length = 385

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 40  DYTVTKQNLIH--HCKMSVHNILLDFSIEAARLEDENGQK 153
           +Y  T ++LIH     + VH I  D++    RL D  GQK
Sbjct: 165 NYVPTAEDLIHMRQTTLGVHEISFDYTKHIIRLIDVGGQK 204


>AY008128-1|AAG32081.1|  385|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 385

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 40  DYTVTKQNLIH--HCKMSVHNILLDFSIEAARLEDENGQK 153
           +Y  T ++LIH     + VH I  D++    RL D  GQK
Sbjct: 165 NYVPTAEDLIHMRQTTLGVHEISFDYTKHIIRLIDVGGQK 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,592,819
Number of Sequences: 27780
Number of extensions: 269664
Number of successful extensions: 648
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)