Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_F22
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   2.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   4.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.9  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 545 SLTDGKSLRIKYCLISDTSFISDSPALTILAAPDLHFKC 429
           SLT  K+   KYC     +  S S  +T++  P   F C
Sbjct: 99  SLTVKKNFANKYCGNITLNIESTSNKMTVILTPPGRFFC 137


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 424 KTHLKCKSGAANIVRAGESLMKLVSDIKQYLILNDFPSVN 543
           K++LKC   +       E  ++  +  +QYL L + P +N
Sbjct: 145 KSNLKCDKCSTYQSNGEEVCLENCTGYQQYLRLLEVPQIN 184


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -3

Query: 218 FVSLFVIFSAVYNRDVTKQLNPKVTLLFVHKISN 117
           F+SL ++   +YN   + QLN     +     SN
Sbjct: 9   FISLIILNDEIYNIIASPQLNNPTLFMIGGVFSN 42


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 67  ILVGTFYSCCVLNCTTQL 120
           I  G  Y+ CVL+C T +
Sbjct: 96  IFKGIGYATCVLSCWTNI 113


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 67  ILVGTFYSCCVLNCTTQL 120
           I  G  Y+ CVL+C T +
Sbjct: 149 IFKGIGYATCVLSCWTNI 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,291
Number of Sequences: 438
Number of extensions: 2901
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)