Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P07_F_F20
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 31 0.11
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|... 29 0.60
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 27 1.4
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 27 2.4
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe... 26 3.2
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 26 4.2
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 25 9.7
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 25 9.7
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 25 9.7
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 31.1 bits (67), Expect = 0.11
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = +2
Query: 239 SSELRVNEFNIQMXSKNIYEQLXKKPSSSPDPEVXKSCQESLLRHGIDXKKCSNXLPDVT 418
++ LR+N +Q S + Q+ + ++ + L +H + K+ LP
Sbjct: 39 NAPLRINPVGVQYLSPALQNQVFPQQNTQISQLHLDLAKFHLAKHQLLNKETIK-LPSFN 97
Query: 419 LKLPKLEGXXIVEHF 463
+LP L+G I EHF
Sbjct: 98 FRLPPLQGKTISEHF 112
>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
2|||Manual
Length = 482
Score = 28.7 bits (61), Expect = 0.60
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +2
Query: 176 VLKKRKKINDIPNVNNEE--PNLSSELRVNEFNIQMXSKNIYEQLXKKPSSSPDPEVXKS 349
V KKR ++D+ N +N+E P S V + ++ E+ P++ +P K
Sbjct: 55 VPKKRHALDDVSNFHNKEGVPLASKNTNVRHTTASVSTRRALEEKSIIPATDDEPASKKR 114
Query: 350 CQESLLRHGI 379
Q S+ +
Sbjct: 115 RQPSVFNSSV 124
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 27.5 bits (58), Expect = 1.4
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 209 PNVNNEEPNLSSELRVNEFNIQMXSKNIYEQLXKKPSSSPDPEVXKS 349
PN+NN+E N +SE + + + + ++N Q +KP SS E K+
Sbjct: 6 PNLNNKEHNRASEKKNSRTHNKKTNRN---QSKEKPVSSRSVETPKN 49
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = +2
Query: 185 KRKKINDIPNVNNEEPNLSSELRVNEFNIQMXSKNIYEQLXKKPSSSPDPEVXKSCQES 361
K+K + +PN E P++S +L + +I + ++ S SP P+ Q +
Sbjct: 293 KKKTQSHLPNRTTEVPSISKQLSKSSTSIATVAPSLASVSSVTKSPSPTPQSAPRAQSA 351
>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 460
Score = 26.2 bits (55), Expect = 3.2
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 179 LKKRKKINDIPNVNNEEPNLSSELRVNEFNIQMXSKNI-YEQLXKKPSSSPDPEVXKSCQ 355
L+K ++N + ++E +LS L +EF+I +KNI + + SS P E +
Sbjct: 347 LEKYFEVNALDISDSESEDLSDILSDSEFSIGNRNKNIGNNEYSAQISSDPAEEEIANAM 406
Query: 356 ESL 364
SL
Sbjct: 407 HSL 409
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 209 PNVNNEEPNLSSELRVNEFNIQMXSKNIYEQLXKKPSSSP 328
P+ N +P+ S E + +FN + N + K SSP
Sbjct: 263 PSSNAAKPSNSEECNIPKFNSSFKTSNDFFTFTKTEESSP 302
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 24.6 bits (51), Expect = 9.7
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 399 LLHFLXSMPCRSKLSWQLXITS-GSGEELGFLXSCSYI 289
LL FL ++ CRSK SWQ T +++ L CS +
Sbjct: 528 LLPFLKAV-CRSKKSWQARHTGVRIIQQIALLLGCSIL 564
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 459 CSTIXSPSNLGNLRVTSGKXLLHFLXSMP 373
C + SP +L N++ +LHF S+P
Sbjct: 84 CFAVDSPDSLDNVQEKWISEVLHFCSSLP 112
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 179 LKKRKKINDIPNVNNEEPNLSSELRVN 259
L++ KKI D+ + NN+E N +V+
Sbjct: 91 LQQEKKIADLQSTNNDEKNEDHSSKVD 117
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,946,189
Number of Sequences: 5004
Number of extensions: 34758
Number of successful extensions: 94
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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