Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P07_F_F20
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1003 - 25183468-25184010,25184295-25184551,25184795-251849... 30 1.1
05_04_0185 - 18857229-18857638,18858347-18858424,18858758-18859931 30 1.1
01_05_0587 + 23452275-23453759 29 1.8
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 28 5.6
08_02_0005 + 11190901-11191896 27 7.5
07_01_0516 - 3850252-3852870 27 7.5
01_01_0100 - 755894-756662,757086-757598,758718-761050 27 7.5
12_02_0771 - 23013984-23014358,23015168-23015980 27 9.9
10_08_0765 - 20421813-20423174,20423591-20423771,20423862-204241... 27 9.9
04_01_0280 - 3757107-3758180 27 9.9
03_02_0812 - 11439258-11439409,11439537-11439612,11439860-114400... 27 9.9
>12_02_1003 -
25183468-25184010,25184295-25184551,25184795-25184971,
25185438-25185905,25186720-25186730,25187589-25187599
Length = 488
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 188 RKKINDIPNVNN-EEPNLSSELRVNEFNIQMXSKNIY 295
RK+ P ++N E PNL SE R+NE+ + N Y
Sbjct: 10 RKRGGTSPKLDNLEVPNLESEERINEYELSENIDNYY 46
>05_04_0185 - 18857229-18857638,18858347-18858424,18858758-18859931
Length = 553
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 188 RKKINDIPNVNN-EEPNLSSELRVNEFNIQMXSKNIY 295
RK+ P ++N E PNL SE R+NE+ + N Y
Sbjct: 469 RKRGGTSPKLDNLEVPNLESEERINEYELSENIDNYY 505
>01_05_0587 + 23452275-23453759
Length = 494
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 344 KSCQESLLRHGIDXKKCSNXLPDVTLKLPKL 436
+SCQES++RH + C + PD + LP L
Sbjct: 156 RSCQESMVRHN-PVEACPDDDPDAAVSLPGL 185
>04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 188 RKKINDIPNVNN-EEPNLSSELRVNEFNIQMXSK 286
RK+ P ++N E PNL SE R+NE+ ++ K
Sbjct: 927 RKRGGISPKLDNLEVPNLESEERINEYELKYIIK 960
>08_02_0005 + 11190901-11191896
Length = 331
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 188 RKKINDIPNVNN-EEPNLSSELRVNEFNIQMXSKNIY 295
RK+ P ++N E PNL E R+NE+ + N Y
Sbjct: 78 RKRGGISPKLDNLEVPNLEPEERINEYELSENIDNYY 114
>07_01_0516 - 3850252-3852870
Length = 872
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Frame = -2
Query: 507 SISYREHTASHQCYEKCSTIXSPSNLGNLRVTS-GKX-----LLHFLXSMPCRSKLSWQL 346
++ + E C+ S + S +GN ++ GK ++ MPCR +SW
Sbjct: 512 ALGFAEFGKQMHCFAAKSGLLSAQGVGNAIISMYGKCGALETAVNVFKRMPCRDLVSWNA 571
Query: 345 XITS 334
ITS
Sbjct: 572 LITS 575
>01_01_0100 - 755894-756662,757086-757598,758718-761050
Length = 1204
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 188 RKKINDIPNVNN-EEPNLSSELRVNEFNIQMXSKNIY 295
RK+ P ++N E PNL E R+NE+ + N Y
Sbjct: 810 RKRGGVSPKLDNLEVPNLEPEERINEYELSENIDNYY 846
>12_02_0771 - 23013984-23014358,23015168-23015980
Length = 395
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 188 RKKINDIPNVNN-EEPNLSSELRVNEFNI 271
RK+ P ++N E PNL SE R+NE+ +
Sbjct: 78 RKRGGISPKLDNLEVPNLESEERINEYEL 106
>10_08_0765 -
20421813-20423174,20423591-20423771,20423862-20424117,
20424768-20425095,20425218-20426156,20427015-20427761,
20428517-20428789
Length = 1361
Score = 27.1 bits (57), Expect = 9.9
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -2
Query: 495 REHTASHQCYEKCSTIXSPSNLG 427
+EH+ +C+EKCS + + +G
Sbjct: 269 KEHSKVRKCFEKCSDLQEQNEMG 291
>04_01_0280 - 3757107-3758180
Length = 357
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 269 IQMXSKNIYEQLXKKPSSSPDPEVXKSCQESLLRHGIDXKKC 394
+Q S +E K+P S P E K C L R+ + +C
Sbjct: 314 VQKDSGKTFELHSKEPPSQPPIERSKCCSRHLSRNNLVLARC 355
>03_02_0812 -
11439258-11439409,11439537-11439612,11439860-11440076,
11440150-11440350,11440673-11440872,11440955-11441075,
11441596-11441636,11441714-11441822,11442037-11442281,
11442382-11442496,11442970-11443064,11444279-11444535,
11444780-11444999,11445473-11445556
Length = 710
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +2
Query: 122 NVGNQRFLSDVLPTTEFKVLKKRKKINDIPNVNNEEPNLSSELRVNEFNI 271
N+ +RF D+ T +L+ + + + VNN+ P L +L +E N+
Sbjct: 509 NIYRERFGHDIDLDTNELILRDQPEEAILLKVNNKVPGLGLQLDASELNL 558
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,539,265
Number of Sequences: 37544
Number of extensions: 192730
Number of successful extensions: 372
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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