Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_F20
         (550 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    25   2.2  
AB090817-1|BAC57909.1|  344|Anopheles gambiae gag-like protein p...    23   5.0  
AF042732-2|AAC18057.1|  179|Anopheles gambiae TU37B2 protein.          23   8.8  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 161 TTEFK-VLKKRKKINDIPNVNNEEPNLSSELRVNEFNIQMXSKNIYE 298
           T E K V+KK ++  ++  V ++   L + L+ +  +++   KNI E
Sbjct: 695 TEELKEVMKKTRRQGELTTVESQIRGLENRLKYSMNDLETSKKNINE 741


>AB090817-1|BAC57909.1|  344|Anopheles gambiae gag-like protein
           protein.
          Length = 344

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 20/83 (24%), Positives = 34/83 (40%)
 Frame = +2

Query: 188 RKKINDIPNVNNEEPNLSSELRVNEFNIQMXSKNIYEQLXKKPSSSPDPEVXKSCQESLL 367
           R+ + +IP+  N  PN      +NE +I    K   ++   KP   P+  +   C    L
Sbjct: 78  REAVENIPSPRNG-PN------INEGSINKRKKKKSKKKQNKPRKRPEALLISDCTSEEL 130

Query: 368 RHGIDXKKCSNXLPDVTLKLPKL 436
              +   K S+ L  V   + K+
Sbjct: 131 AKLLKEMKQSDALKSVGETISKV 153


>AF042732-2|AAC18057.1|  179|Anopheles gambiae TU37B2 protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 300 CSYIFLXIICILN 262
           CS+IFL I+C ++
Sbjct: 134 CSFIFLYILCTMS 146


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 478,610
Number of Sequences: 2352
Number of extensions: 7870
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50881347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)