Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P07_F_F20
(550 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X98093-1|CAA66719.1| 1239|Homo sapiens DNA polymerase gamma prot... 47 5e-05
U74651-1|AAB18268.1| 200|Homo sapiens DNA polymerase gamma prot... 47 5e-05
U60325-1|AAC50712.1| 1239|Homo sapiens DNA polymerase gamma prot... 47 5e-05
D84103-1|BAA12223.1| 1241|Homo sapiens mitochondrial DNA polymer... 47 5e-05
BC050559-1|AAH50559.1| 1239|Homo sapiens POLG protein protein. 47 5e-05
BC042571-1|AAH42571.1| 1239|Homo sapiens polymerase (DNA directe... 47 5e-05
AF497906-1|AAM77583.1| 1240|Homo sapiens polymerase (DNA directe... 47 5e-05
X83957-1|CAA58788.1| 6669|Homo sapiens nebulin protein. 31 2.0
U35637-1|AAB02622.1| 3007|Homo sapiens nebulin protein. 31 2.0
AC009497-1|AAY14651.1| 2802|Homo sapiens unknown protein. 31 2.0
>X98093-1|CAA66719.1| 1239|Homo sapiens DNA polymerase gamma
protein.
Length = 1239
Score = 46.8 bits (106), Expect = 5e-05
Identities = 25/73 (34%), Positives = 40/73 (54%)
Frame = +2
Query: 245 ELRVNEFNIQMXSKNIYEQLXKKPSSSPDPEVXKSCQESLLRHGIDXKKCSNXLPDVTLK 424
+LR N +IQM S+ ++EQ+ + P + E L +HG+ + + LPDV L+
Sbjct: 68 QLRHNPLDIQMLSRGLHEQIFGQGGEMPGEAAVRRSVEHLQKHGLWGQP-AVPLPDVELR 126
Query: 425 LPKLEGXXIVEHF 463
LP L G + +HF
Sbjct: 127 LPPLYGDNLDQHF 139
>U74651-1|AAB18268.1| 200|Homo sapiens DNA polymerase gamma
protein.
Length = 200
Score = 46.8 bits (106), Expect = 5e-05
Identities = 25/73 (34%), Positives = 40/73 (54%)
Frame = +2
Query: 245 ELRVNEFNIQMXSKNIYEQLXKKPSSSPDPEVXKSCQESLLRHGIDXKKCSNXLPDVTLK 424
+LR N +IQM S+ ++EQ+ + P + E L +HG+ + + LPDV L+
Sbjct: 68 QLRHNPLDIQMLSRGLHEQIFGQGGEMPGEAAVRRSVEHLQKHGLWGQP-AVPLPDVELR 126
Query: 425 LPKLEGXXIVEHF 463
LP L G + +HF
Sbjct: 127 LPPLYGDNLDQHF 139
>U60325-1|AAC50712.1| 1239|Homo sapiens DNA polymerase gamma
protein.
Length = 1239
Score = 46.8 bits (106), Expect = 5e-05
Identities = 25/73 (34%), Positives = 40/73 (54%)
Frame = +2
Query: 245 ELRVNEFNIQMXSKNIYEQLXKKPSSSPDPEVXKSCQESLLRHGIDXKKCSNXLPDVTLK 424
+LR N +IQM S+ ++EQ+ + P + E L +HG+ + + LPDV L+
Sbjct: 68 QLRHNPLDIQMLSRGLHEQIFGQGGEMPGEAAVRRSVEHLQKHGLWGQP-AVPLPDVELR 126
Query: 425 LPKLEGXXIVEHF 463
LP L G + +HF
Sbjct: 127 LPPLYGDNLDQHF 139
>D84103-1|BAA12223.1| 1241|Homo sapiens mitochondrial DNA polymerase
gamma protein.
Length = 1241
Score = 46.8 bits (106), Expect = 5e-05
Identities = 25/73 (34%), Positives = 40/73 (54%)
Frame = +2
Query: 245 ELRVNEFNIQMXSKNIYEQLXKKPSSSPDPEVXKSCQESLLRHGIDXKKCSNXLPDVTLK 424
+LR N +IQM S+ ++EQ+ + P + E L +HG+ + + LPDV L+
Sbjct: 70 QLRHNPLDIQMLSRGLHEQIFGQGGEMPGEAAVRRSVEHLQKHGLWGQP-AVPLPDVELR 128
Query: 425 LPKLEGXXIVEHF 463
LP L G + +HF
Sbjct: 129 LPPLYGDNLDQHF 141
>BC050559-1|AAH50559.1| 1239|Homo sapiens POLG protein protein.
Length = 1239
Score = 46.8 bits (106), Expect = 5e-05
Identities = 25/73 (34%), Positives = 40/73 (54%)
Frame = +2
Query: 245 ELRVNEFNIQMXSKNIYEQLXKKPSSSPDPEVXKSCQESLLRHGIDXKKCSNXLPDVTLK 424
+LR N +IQM S+ ++EQ+ + P + E L +HG+ + + LPDV L+
Sbjct: 68 QLRHNPLDIQMLSRGLHEQIFGQGGEMPGEAAVRRSVEHLQKHGLWGQP-AVPLPDVELR 126
Query: 425 LPKLEGXXIVEHF 463
LP L G + +HF
Sbjct: 127 LPPLYGDNLDQHF 139
>BC042571-1|AAH42571.1| 1239|Homo sapiens polymerase (DNA directed),
gamma protein.
Length = 1239
Score = 46.8 bits (106), Expect = 5e-05
Identities = 25/73 (34%), Positives = 40/73 (54%)
Frame = +2
Query: 245 ELRVNEFNIQMXSKNIYEQLXKKPSSSPDPEVXKSCQESLLRHGIDXKKCSNXLPDVTLK 424
+LR N +IQM S+ ++EQ+ + P + E L +HG+ + + LPDV L+
Sbjct: 68 QLRHNPLDIQMLSRGLHEQIFGQGGEMPGEAAVRRSVEHLQKHGLWGQP-AVPLPDVELR 126
Query: 425 LPKLEGXXIVEHF 463
LP L G + +HF
Sbjct: 127 LPPLYGDNLDQHF 139
>AF497906-1|AAM77583.1| 1240|Homo sapiens polymerase (DNA directed),
gamma protein.
Length = 1240
Score = 46.8 bits (106), Expect = 5e-05
Identities = 25/73 (34%), Positives = 40/73 (54%)
Frame = +2
Query: 245 ELRVNEFNIQMXSKNIYEQLXKKPSSSPDPEVXKSCQESLLRHGIDXKKCSNXLPDVTLK 424
+LR N +IQM S+ ++EQ+ + P + E L +HG+ + + LPDV L+
Sbjct: 69 QLRHNPLDIQMLSRGLHEQIFGQGGEMPGEAAVRRSVEHLQKHGLWGQP-AVPLPDVELR 127
Query: 425 LPKLEGXXIVEHF 463
LP L G + +HF
Sbjct: 128 LPPLYGDNLDQHF 140
>X83957-1|CAA58788.1| 6669|Homo sapiens nebulin protein.
Length = 6669
Score = 31.5 bits (68), Expect = 2.0
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +2
Query: 131 NQRFLSDVLPTTEFKVLKKRKKINDIPNVNNEEPNLSSELRVNEFNIQMXSKNIYEQLXK 310
NQ+ L+ + E +K K + +P +++PN + LRV + NI +++YE+
Sbjct: 4730 NQKHLASHIKYRE--EYEKFKALYTLPRSVDDDPNTARCLRVGKLNIDRLYRSVYEKNKM 4787
Query: 311 KPSSSPD 331
K PD
Sbjct: 4788 KIHIVPD 4794
>U35637-1|AAB02622.1| 3007|Homo sapiens nebulin protein.
Length = 3007
Score = 31.5 bits (68), Expect = 2.0
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +2
Query: 131 NQRFLSDVLPTTEFKVLKKRKKINDIPNVNNEEPNLSSELRVNEFNIQMXSKNIYEQLXK 310
NQ+ L+ + E +K K + +P +++PN + LRV + NI +++YE+
Sbjct: 1161 NQKHLASHIKYRE--EYEKFKALYTLPRSVDDDPNTARCLRVGKLNIDRLYRSVYEKNKM 1218
Query: 311 KPSSSPD 331
K PD
Sbjct: 1219 KIHIVPD 1225
>AC009497-1|AAY14651.1| 2802|Homo sapiens unknown protein.
Length = 2802
Score = 31.5 bits (68), Expect = 2.0
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +2
Query: 131 NQRFLSDVLPTTEFKVLKKRKKINDIPNVNNEEPNLSSELRVNEFNIQMXSKNIYEQLXK 310
NQ+ L+ + E +K K + +P +++PN + LRV + NI +++YE+
Sbjct: 863 NQKHLASHIKYRE--EYEKFKALYTLPRSVDDDPNTARCLRVGKLNIDRLYRSVYEKNKM 920
Query: 311 KPSSSPD 331
K PD
Sbjct: 921 KIHIVPD 927
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,700,677
Number of Sequences: 237096
Number of extensions: 1121145
Number of successful extensions: 1746
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1739
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -