Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P07_F_F20
(550 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U62547-1|AAC47658.1| 1145|Drosophila melanogaster mitochondrial ... 54 1e-07
U60298-1|AAC47290.1| 1145|Drosophila melanogaster DNA polymerase... 54 1e-07
AY089226-1|AAL89964.1| 1145|Drosophila melanogaster AT02241p pro... 54 1e-07
AE014134-2406|AAF53338.1| 1145|Drosophila melanogaster CG8987-PA... 54 1e-07
BT023408-1|AAY55824.1| 1585|Drosophila melanogaster AT18603p pro... 31 1.4
AE014134-1126|AAF52412.2| 1585|Drosophila melanogaster CG31635-P... 31 1.4
AY094860-1|AAM11213.1| 439|Drosophila melanogaster RE19693p pro... 28 7.2
AE014297-2413|AAF55472.3| 439|Drosophila melanogaster CG17802-P... 28 7.2
>U62547-1|AAC47658.1| 1145|Drosophila melanogaster mitochondrial DNA
polymerase catalyticsubunit precursor protein.
Length = 1145
Score = 54.0 bits (124), Expect = 1e-07
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Frame = +2
Query: 170 FKVLKKRKKINDIPNVNNEEPNLSSELRVNEFNIQMXSKNIYEQLXKK-PSSSPDPEVX- 343
F+ +K +K+N N E N +E N +QM S+N++ QL + P S + +V
Sbjct: 26 FRRVKPPQKVNKPKKPENVE-NGPTEYAENLVKVQMISRNLHAQLFPQAPRSISEQQVAS 84
Query: 344 -KSCQESLLRHGIDXKKCSNXLPDVTLKLPKLEGXXIVEHF 463
K ++ L RHG+D + S + DV LKLP L G I EHF
Sbjct: 85 AKVYKDELRRHGVDIES-SAPVSDVQLKLPPLRGANIEEHF 124
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +3
Query: 462 FHNIGEKQCAPYRRLIXDLAGA-RLPNLPK 548
FHNI ++Q PY L+ L +LP PK
Sbjct: 124 FHNIAKEQVQPYEELLLPLVQCEQLPKRPK 153
>U60298-1|AAC47290.1| 1145|Drosophila melanogaster DNA polymerase
gamma protein.
Length = 1145
Score = 54.0 bits (124), Expect = 1e-07
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Frame = +2
Query: 170 FKVLKKRKKINDIPNVNNEEPNLSSELRVNEFNIQMXSKNIYEQLXKK-PSSSPDPEVX- 343
F+ +K +K+N N E N +E N +QM S+N++ QL + P S + +V
Sbjct: 26 FRRVKPPQKVNKPKKPENVE-NGPTEYAENLVKVQMISRNLHAQLFPQAPRSISEQQVAS 84
Query: 344 -KSCQESLLRHGIDXKKCSNXLPDVTLKLPKLEGXXIVEHF 463
K ++ L RHG+D + S + DV LKLP L G I EHF
Sbjct: 85 AKVYKDELRRHGVDIES-SAPVSDVQLKLPALRGANIEEHF 124
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +3
Query: 462 FHNIGEKQCAPYRRLIXDLAGA-RLPNLPK 548
FHNI ++Q PY L+ L +LP PK
Sbjct: 124 FHNIAKEQVQPYEELLLPLVQCEQLPKRPK 153
>AY089226-1|AAL89964.1| 1145|Drosophila melanogaster AT02241p
protein.
Length = 1145
Score = 54.0 bits (124), Expect = 1e-07
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Frame = +2
Query: 170 FKVLKKRKKINDIPNVNNEEPNLSSELRVNEFNIQMXSKNIYEQLXKK-PSSSPDPEVX- 343
F+ +K +K+N N E N +E N +QM S+N++ QL + P S + +V
Sbjct: 26 FRRVKPPQKVNKPKKPENVE-NGPTEYAENLVKVQMISRNLHAQLFPQAPRSISEQQVAS 84
Query: 344 -KSCQESLLRHGIDXKKCSNXLPDVTLKLPKLEGXXIVEHF 463
K ++ L RHG+D + S + DV LKLP L G I EHF
Sbjct: 85 AKVYKDELRRHGVDIES-SAPVSDVQLKLPALRGANIEEHF 124
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +3
Query: 462 FHNIGEKQCAPYRRLIXDLAGA-RLPNLPK 548
FHNI ++Q PY L+ L +LP PK
Sbjct: 124 FHNIAKEQVQPYEELLLPLVQCEQLPKRPK 153
>AE014134-2406|AAF53338.1| 1145|Drosophila melanogaster CG8987-PA
protein.
Length = 1145
Score = 54.0 bits (124), Expect = 1e-07
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Frame = +2
Query: 170 FKVLKKRKKINDIPNVNNEEPNLSSELRVNEFNIQMXSKNIYEQLXKK-PSSSPDPEVX- 343
F+ +K +K+N N E N +E N +QM S+N++ QL + P S + +V
Sbjct: 26 FRRVKPPQKVNKPKKPENVE-NGPTEYAENLVKVQMISRNLHAQLFPQAPRSISEQQVAS 84
Query: 344 -KSCQESLLRHGIDXKKCSNXLPDVTLKLPKLEGXXIVEHF 463
K ++ L RHG+D + S + DV LKLP L G I EHF
Sbjct: 85 AKVYKDELRRHGVDIES-SAPVSDVQLKLPALRGANIEEHF 124
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +3
Query: 462 FHNIGEKQCAPYRRLIXDLAGA-RLPNLPK 548
FHNI ++Q PY L+ L +LP PK
Sbjct: 124 FHNIAKEQVQPYEELLLPLVQCEQLPKRPK 153
>BT023408-1|AAY55824.1| 1585|Drosophila melanogaster AT18603p
protein.
Length = 1585
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 131 NQRFLSDVLPTTEFKVLKKRKKI--NDIPNVNNEEPNLSSELRVNEFNIQMXSK 286
N+R L D+ P+TE K ++ + N+I N NN +S N IQ+ S+
Sbjct: 669 NERNLCDITPSTEAKTVEPNESCVQNNIINNNNNNNANNSHNNTNNNTIQLPSE 722
>AE014134-1126|AAF52412.2| 1585|Drosophila melanogaster CG31635-PA
protein.
Length = 1585
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 131 NQRFLSDVLPTTEFKVLKKRKKI--NDIPNVNNEEPNLSSELRVNEFNIQMXSK 286
N+R L D+ P+TE K ++ + N+I N NN +S N IQ+ S+
Sbjct: 669 NERNLCDITPSTEAKTVEPNESCVQNNIINNNNNNNANNSHNNTNNNTIQLPSE 722
>AY094860-1|AAM11213.1| 439|Drosophila melanogaster RE19693p
protein.
Length = 439
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/60 (23%), Positives = 32/60 (53%)
Frame = +2
Query: 182 KKRKKINDIPNVNNEEPNLSSELRVNEFNIQMXSKNIYEQLXKKPSSSPDPEVXKSCQES 361
KK ++ +++ N N E +++ E+ ++ + + + YE + K + D E + C+ES
Sbjct: 131 KKEEEESEV-NENKEFEDIACEIPFSKEDDEQEQQQEYEDMVDKKTGHDDGEESQECEES 189
>AE014297-2413|AAF55472.3| 439|Drosophila melanogaster CG17802-PA
protein.
Length = 439
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/60 (23%), Positives = 32/60 (53%)
Frame = +2
Query: 182 KKRKKINDIPNVNNEEPNLSSELRVNEFNIQMXSKNIYEQLXKKPSSSPDPEVXKSCQES 361
KK ++ +++ N N E +++ E+ ++ + + + YE + K + D E + C+ES
Sbjct: 131 KKEEEESEV-NENKEFEDIACEIPFSKEDDEQEQQQEYEDMVDKKTGHDDGEESQECEES 189
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,964,711
Number of Sequences: 53049
Number of extensions: 347144
Number of successful extensions: 1021
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2089831299
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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