Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_F06
         (655 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   1.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   5.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   5.1  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   8.9  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 634 SPVATPRTDPSSRYSTSAPAH 572
           SP +TP + P+ R STS P +
Sbjct: 76  SPSSTPSSLPTQRTSTSNPTY 96


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 189 PSPPLRVPYLSLSILDPYLL 130
           PSP   V   S+S+  PY+L
Sbjct: 702 PSPSTSVASPSVSVASPYML 721


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 189 PSPPLRVPYLSLSILDPYLL 130
           PSP   V   S+S+  PY+L
Sbjct: 594 PSPSTSVASPSVSVASPYML 613


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +3

Query: 312 GHILSGACVDPIALNELIPDWKERGAPMNTPVTS 413
           G I    C D +  N+   ++++   P N   TS
Sbjct: 61  GQITEKLCPDGMVFNDYSSEYEKCDLPFNIDCTS 94


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,264
Number of Sequences: 336
Number of extensions: 3505
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)