Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_F06
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...   130   2e-31
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    28   1.4  
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    28   1.4  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    26   4.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.1  
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb...    25   7.2  
SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomy...    25   9.5  

>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score =  130 bits (313), Expect = 2e-31
 Identities = 65/160 (40%), Positives = 88/160 (55%)
 Frame = +3

Query: 165 MERVAEETDILXXXXXXXXXXXXXXXXXXXXEKGAEVRVTLLEKAAETGGHILSGACVDP 344
           +ER  E+ D+                     +   ++RV +LEKAAE G H +SGA + P
Sbjct: 84  IEREVEDVDVCIVGAGPAGLSAAIRIKQQAAKANRDIRVVVLEKAAEPGNHSVSGAVIQP 143

Query: 345 IALNELIPDWKERGAPMNTPVTSDKFGLLTKSSRIPIPVFPGLPNYNHGNYVVRLGHLVK 524
            AL+EL+P+W++      T VT DK   L      PIPV P + N  HGNYV+ L    +
Sbjct: 144 TALDELLPNWRDDPPENCTAVTHDKMKFLIPKLHFPIPVPPAMKN--HGNYVMSLAEFTR 201

Query: 525 WLGEQAEELGAEVWPGCAGAEVLYREDGSVRGVATGDVGI 644
           WL  +AEE G E++P  A +EVLY +DGSV GVAT D G+
Sbjct: 202 WLAAKAEEYGVEIYPSFAASEVLYNKDGSVIGVATNDFGV 241


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 457 GIGILLLFVNRPNLSDVTGVFIGAPRSFQSGI 362
           G+GIL    N  + +  +G+ IGA  SF SGI
Sbjct: 113 GVGILKAGGNAVDAAIASGICIGAVNSFSSGI 144


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +3

Query: 429 LTKSSRIPIPVFPGLPNYNHGNYVVRL-GHLVKWLGEQAEELGAEVWPGCAGAEVL 593
           L +  R+   ++ G PN+     +V++    +K+  +   +L AE   GC+GAEV+
Sbjct: 699 LMRPGRLDRLLYVGPPNFEARKQIVKIQAEKMKFAEDVDLDLIAEKTEGCSGAEVV 754


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 453 IPVFPGLPNYNHGNYVVRLGHLVKWLGEQAEEL 551
           IP F GL +   G Y + L   V WL ++A+ L
Sbjct: 393 IPSFGGLHHCILGRYSISLDDFVLWLLDRAQRL 425


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -1

Query: 655 PSLAMPTSPVATPRTDPSSRYSTSAPAHPGHT 560
           P     T+PV TP   P+S  STS P  P  T
Sbjct: 292 PPTGNSTTPV-TPTVPPTSTSSTSTPPPPAST 322



 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -1

Query: 655 PSLAMPTSPVATPRTDPSSRYSTSAPAHPGHT 560
           P     T+PV TP   P+S  STS P  P  T
Sbjct: 346 PPTGNSTTPV-TPTVPPTSTSSTSTPPPPAST 376


>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 411 SDKFGLLTKSSRIPIPVFPGLPNYNHGNYVVRLGHLVKWLG 533
           S + G+L  + ++ I +  GLP     N  V +   ++WLG
Sbjct: 41  STESGMLFHAGKLVI-IMSGLPARGKSNIAVSIDRYLRWLG 80


>SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 166

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +1

Query: 214 QRVWQLQSEQDK*QLKRGQK*E*LYWKRQQRLEGIYCQEP 333
           QR  +LQ EQ++ + +R QK E +  ++QQ+   +  ++P
Sbjct: 95  QRKIELQQEQERLEQERRQKEEAIALQKQQQQRLLRSKDP 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,083
Number of Sequences: 5004
Number of extensions: 55971
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)