Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P07_F_F06
(655 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00048-15|AAB53835.2| 597|Caenorhabditis elegans Lethal protein... 203 1e-52
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 29 2.9
Z48544-2|CAA88437.1| 766|Caenorhabditis elegans Hypothetical pr... 28 5.0
U41022-1|AAA82338.3| 303|Caenorhabditis elegans Hypothetical pr... 28 5.0
AF078781-1|AAC26915.2| 258|Caenorhabditis elegans Hypothetical ... 28 5.0
U43283-3|AAC69024.2| 880|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical pr... 27 8.8
X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha nicot... 27 8.8
X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic acety... 27 8.8
AF043693-11|AAB97541.2| 213|Caenorhabditis elegans Hypothetical... 27 8.8
>U00048-15|AAB53835.2| 597|Caenorhabditis elegans Lethal protein
721 protein.
Length = 597
Score = 203 bits (495), Expect = 1e-52
Identities = 92/182 (50%), Positives = 123/182 (67%)
Frame = +3
Query: 108 STHYTIHPRDKDPRWKEINMERVAEETDILXXXXXXXXXXXXXXXXXXXXEKGAEVRVTL 287
+THYT+ R DPRWK++++ R ++ D++ + E+RV +
Sbjct: 25 TTHYTVKDRSTDPRWKDVDLARESDVYDVVIVGGGPSGLSAAIRLRQLAEKAQKELRVCV 84
Query: 288 LEKAAETGGHILSGACVDPIALNELIPDWKERGAPMNTPVTSDKFGLLTKSSRIPIPVFP 467
+EKA+ GGH LSGA ++ AL+ELIP+WKE GAP+ VTS+ +LT+S RIP+PV P
Sbjct: 85 VEKASVIGGHTLSGAVIETRALDELIPNWKELGAPVYQQVTSESIAILTESGRIPVPVLP 144
Query: 468 GLPNYNHGNYVVRLGHLVKWLGEQAEELGAEVWPGCAGAEVLYREDGSVRGVATGDVGIA 647
G+P NHGNY+VRLG +V+WLGEQAE G EVWP A +EVLY EDGSV+G+AT DVGI
Sbjct: 145 GVPLANHGNYIVRLGKVVQWLGEQAEAAGVEVWPEIAASEVLYNEDGSVKGIATSDVGIG 204
Query: 648 KD 653
KD
Sbjct: 205 KD 206
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/47 (40%), Positives = 21/47 (44%)
Frame = +2
Query: 167 GTRSGGDGHPHYRWGPSGYGSCNPSKTNSS*KGGRSKSDFTGKGSRD 307
G +GGD P GPS G NPS SS GG S G+ D
Sbjct: 1436 GPSTGGDPSP----GPSPNGPSNPSVPESSTGGGPSPGPAPDPGTSD 1478
>Z48544-2|CAA88437.1| 766|Caenorhabditis elegans Hypothetical
protein ZK945.3 protein.
Length = 766
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 51 VGRLTNAARRLYSDVYPKISTHYTIHPRD 137
V L N ++L D + + HY +HPRD
Sbjct: 533 VSELANEMKKLIEDDWGEKVIHYLVHPRD 561
>U41022-1|AAA82338.3| 303|Caenorhabditis elegans Hypothetical
protein K08B5.2 protein.
Length = 303
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = -2
Query: 171 VPYLSLSILD--PYLLDVLYNGLIF*DIHQNKASWLRLLASPPVE 43
+P+L + ++ P++ ++ +NG +F Q +A + LLA P +E
Sbjct: 217 IPHLIMKFIECHPHIQEIAFNGFLFTTQEQVQAFYGHLLALPQLE 261
>AF078781-1|AAC26915.2| 258|Caenorhabditis elegans Hypothetical
protein B0545.3 protein.
Length = 258
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +3
Query: 468 GLPNYNHGNYVVRLGHLVKWLGEQAEELGAEVWPGCAGAEVLYREDGSVRG 620
G+ N Y R+GH + L ++ +LG CA E R+DGS+ G
Sbjct: 154 GIKNLKLSRYDSRIGHATQILWKETRKLG------CAVQECPARQDGSLDG 198
>U43283-3|AAC69024.2| 880|Caenorhabditis elegans Hypothetical
protein T25G12.6 protein.
Length = 880
Score = 27.9 bits (59), Expect = 6.7
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = -1
Query: 655 PSLAMPTSPVATPRTDPSSRYS----TSAP--AHPGHTXXXXXXXXXXSHLTRCPSLTT 497
P ++PT P TP T P+S S T +P A+PG T + +T+ P TT
Sbjct: 219 PCASVPTGPTKTPVTVPTSTGSVSRETKSPVTANPGSTVSTSLSSKPVTVVTQSPRSTT 277
>Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical
protein F09E8.7 protein.
Length = 507
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +1
Query: 439 VAEYLYLYFLVYRITIMVTTL 501
VA+YL L F++ ITIMVTT+
Sbjct: 301 VAKYLLLTFVLNIITIMVTTI 321
>X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit protein.
Length = 507
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +1
Query: 439 VAEYLYLYFLVYRITIMVTTL 501
VA+YL L F++ ITIMVTT+
Sbjct: 301 VAKYLLLTFVLNIITIMVTTI 321
>X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 507
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +1
Query: 439 VAEYLYLYFLVYRITIMVTTL 501
VA+YL L F++ ITIMVTT+
Sbjct: 301 VAKYLLLTFVLNIITIMVTTI 321
>AF043693-11|AAB97541.2| 213|Caenorhabditis elegans Hypothetical
protein C34B2.9 protein.
Length = 213
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +3
Query: 396 NTPVTSDKFGLLTKSSRIPIPVFPGLPNYNHGN 494
N P +S L SS IP P P LP H N
Sbjct: 114 NNPPSSSPVPLHVSSSTIPPPPLPPLPTTLHSN 146
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,926,499
Number of Sequences: 27780
Number of extensions: 320375
Number of successful extensions: 1053
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -