Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_E23
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    30   0.25 
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    29   0.77 
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    28   1.4  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    26   4.1  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   5.5  
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy...    26   5.5  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    25   7.2  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    25   7.2  
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    25   9.5  
SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc...    25   9.5  
SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|...    25   9.5  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    25   9.5  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.5  

>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -2

Query: 610 GVISSICAFSTRLKLLADSTVGKLCFKFKKHVLRFSVFCWKHSGPPSAMNKAIRSP 443
           GV  SI  F++RL+ L D        K     +  S+  W+   PPS ++ + +SP
Sbjct: 279 GVGGSILEFNSRLQKLVDDPNSLKAIKTSTQNVGRSIVYWEKEFPPSNIDSSPQSP 334


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
 Frame = +3

Query: 144 TKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPN--GALDEVFKKYCDKSAQ 317
           T+N+   K+  ++ ++++F  CL    +LN LK+ + +   +   A  +V  +Y  KS  
Sbjct: 40  TQNDGSKKLSSIDGSIKSFAACLH---ELNRLKSRVGDRIRDYASASKQVQNEYHQKSNH 96

Query: 318 LKGCISSVLQ 347
           L+   + VL+
Sbjct: 97  LREKFAQVLE 106


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/69 (24%), Positives = 37/69 (53%)
 Frame = +3

Query: 216 GLVDLNVLKTEIEEAKPNGALDEVFKKYCDKSAQLKGCISSVLQGVRPCVGNEYANHIND 395
           GL  +N+L + ++ +K    LD+V     D + +L  C++S+L+  +   G+E    +  
Sbjct: 85  GLKIVNILSS-LDSSKWEAYLDQVVN--ADSADELTVCLTSILKKAKIIPGSEARVFVGY 141

Query: 396 AQNSTNQLI 422
              ST++++
Sbjct: 142 DSRSTSEIL 150


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -3

Query: 582 QQGSSYWRIPQWGSSVSNLKSMS*DSQSFAGSTQGRLP 469
           Q+ SS  R+  + S++S+LKS    SQ+  GST   +P
Sbjct: 376 QRLSSLNRVASFESNISSLKSALYASQNSDGSTSNPVP 413


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 369 NEYANHINDAQNSTNQLIDFVCYKDGD 449
           +EY N + D + + N++++   YKD D
Sbjct: 569 DEYRNKLKDKEETYNEVMNAFQYKDND 595


>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/21 (52%), Positives = 18/21 (85%)
 Frame = +3

Query: 579 VENAQIDEMTPVS*ILESVHT 641
           +ENAQ+DE TPV  +L++++T
Sbjct: 35  LENAQVDEETPV--LLKNIYT 53


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/58 (22%), Positives = 25/58 (43%)
 Frame = -2

Query: 610 GVISSICAFSTRLKLLADSTVGKLCFKFKKHVLRFSVFCWKHSGPPSAMNKAIRSPSL 437
           G+ +S C   +    L D  +     +F K +++     + +SG  +   K +  PSL
Sbjct: 112 GICASSCQIDSYQSSLIDDALETFGGRFSKGLMKSMTHLFTYSGMGAKCKKVLDKPSL 169


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 406 LFWASLMWFAYSLPTQGRTPCSTELIQP 323
           L WAS+  FAY LP     P +T    P
Sbjct: 128 LQWASVPLFAYDLPPDPSNPNATSSSPP 155


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +3

Query: 366 GNEYANHINDAQNSTNQLIDFVCYKDGDRIALFIAEG 476
           G+   NH+ D    T  +  F+ Y D   I  F  +G
Sbjct: 207 GSHLMNHLKDYVRGTTTIQHFLTYADNYAIGYFKKQG 243


>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 504 ENLKTCFLNLKQSFPTVESANNLSLVENAQID 599
           E L     +L +  PT  SAN L++ ENA+++
Sbjct: 254 EKLAVLVRDLDEEQPTQLSANELNMEENAEMN 285


>SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 106

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 429 VCYKDGDRIALFIAEGGPECFQQKTENLKTCFL-NLKQSFPTVESANN 569
           VCY+  D   + IA  GP+  + + +  KT  L  +  SF    ++NN
Sbjct: 11  VCYQPEDTTFIIIASNGPDVMRWRKD--KTVPLTEIVDSFQVFTTSNN 56


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +3

Query: 315 QLKGCISSVLQGVRPCVG---NEYANHINDAQNSTNQLIDFVCYKD 443
           +L   I+  L  ++P +    N Y  HI  +  +  +L  F CYK+
Sbjct: 53  KLTKAITEYLSNLKPQLSKQENIYVKHIKSSNEAKTELEIFNCYKE 98


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/62 (22%), Positives = 28/62 (45%)
 Frame = +3

Query: 288 FKKYCDKSAQLKGCISSVLQGVRPCVGNEYANHINDAQNSTNQLIDFVCYKDGDRIALFI 467
           FK Y D +  L    +  +     C+ +EY   +  + +S++Q    + Y++  R A  +
Sbjct: 13  FKFYIDTALLLN---AEFISSFTNCINSEYNGKVKISYSSSSQQFKVIVYEEHKREAFSL 69

Query: 468 AE 473
            E
Sbjct: 70  FE 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,707
Number of Sequences: 5004
Number of extensions: 48114
Number of successful extensions: 141
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)