Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_D22
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.10 |srb7|med21|mediator complex subunit Srb7 |Schizosac...    31   0.19 
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo...    28   1.3  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   3.1  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    26   5.4  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    25   9.5  

>SPBC1604.10 |srb7|med21|mediator complex subunit Srb7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = +2

Query: 113 MADRLTQLQDTINQQAENFCNSIGILQQFSLPSKFPGFER 232
           MA R TQLQDTI++ A  F +SI  L         PG E+
Sbjct: 1   MACRCTQLQDTIDEVATQFYSSIHYLSSHHDFVPLPGQEK 40


>SPBC582.07c |rpn7||19S proteasome regulatory subunit
           Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 409

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 410 EAAEQLEEVVRQGEILLEKIQ 472
           E   Q +EVV+QG++LL K+Q
Sbjct: 376 EKNRQYQEVVKQGDVLLNKLQ 396


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -2

Query: 178  AVTKILSLLVYGILKLS*AISHYSIQIFILLTTVKI*SLYGYFLWKVV 35
            A+ +IL    Y +  LS   +  ++ ++ILL+     SL+ +FL +VV
Sbjct: 1944 AIGQILGASSYQLTLLSGESAQSTVSMYILLSIFSFFSLFWWFLSRVV 1991


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 574 VLPTVVSSTKGYVKTRIHGSIL 639
           +L  +V STK  ++ ++HG+IL
Sbjct: 40  ILQKLVDSTKDIIENKVHGNIL 61


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +1

Query: 526 DPQQGCETTVIGMGSGVLPTVVSSTKGYVKTRIHG 630
           DP Q  ++ + G+GSG+L  +    +    T++ G
Sbjct: 43  DPHQNDDSNIPGLGSGLLERIKDIVQRPTDTQLKG 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,280,503
Number of Sequences: 5004
Number of extensions: 39426
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)