Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_D16
         (408 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    41   9e-05
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    26   2.6  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   3.4  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    25   6.0  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    25   6.0  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   6.0  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    24   7.9  
SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    24   7.9  

>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 40.7 bits (91), Expect = 9e-05
 Identities = 23/61 (37%), Positives = 33/61 (54%)
 Frame = +3

Query: 225 AFAFGFVVLGNAMAXGPTSGAHMNPAVTLAAALQGRMSPXLAAVYTVAQVLGACXGFGAL 404
           +FA+GF  +      G  SG H+NPAVT++ A+  +       +Y   Q+ GA  G GAL
Sbjct: 348 SFAWGFGCMLGVYIAGGISGGHVNPAVTISLAIFRKFPWYKVPIYIFFQIWGAFFG-GAL 406

Query: 405 A 407
           A
Sbjct: 407 A 407


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 18/72 (25%), Positives = 28/72 (38%)
 Frame = -3

Query: 322  SAAASVTAGFMCAPDVGPXAIALPSTTNPKAKAGCDSTTASFPLYGTTXLTPSHIEERRG 143
            S++ + T         G     +PS   P   + C S+ A   L     ++PS++  R  
Sbjct: 803  SSSYATTVATASGTSTGTVLQVVPSLF-PGCNSKCTSSNAFRILVENDSISPSYLTYRES 861

Query: 142  QQLGDQRSPPSP 107
               G   S PSP
Sbjct: 862  DGFGIASSNPSP 873


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -3

Query: 319 AAASVTAGFMCAPDVGPXAIALPSTTNPK-AKAGCDSTTASFPLYGTT 179
           A++S+T+  + +  +   ++A  STT+   A +  +STT++ P    T
Sbjct: 130 ASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSAT 177


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 217 DSTTASFPLYGTTXLTPSHI 158
           D   AS PLY ++ + PSHI
Sbjct: 387 DELAASSPLYTSSSVPPSHI 406


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 253 PSTTNPKAKAGCDSTTASFPLYGTTXLTPS 164
           PS+++  A +   STT+S  L  +T LT S
Sbjct: 110 PSSSSSSAASSTTSTTSSSSLVSSTTLTSS 139


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 17/64 (26%), Positives = 25/64 (39%)
 Frame = -3

Query: 256 LPSTTNPKAKAGCDSTTASFPLYGTTXLTPSHIEERRGQQLGDQRSPPSPHPAGKIRAAV 77
           LP+TT+PK      S + S     T    P     +   +L    S  +P    K+  A+
Sbjct: 425 LPTTTSPKVNPEPHSESISDTRPSTPRKVPPSTVPKMNPKLQGGNSVTAPSTPSKVLPAM 484

Query: 76  SSSV 65
           S  V
Sbjct: 485 SPKV 488


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 214 STTASFPLYGTTXLTPSHIEE 152
           ST  SF  +G T +TP HI++
Sbjct: 581 STYGSFKHHGKTFVTPPHIKK 601


>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 346

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 132 ETNARHHRRTQPEKSARLYLRLWRACGA 49
           E + +H +R   E   +LY   W  C A
Sbjct: 81  EDSGKHSKRFSIEYKGKLYTGYWSLCAA 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,442,074
Number of Sequences: 5004
Number of extensions: 23268
Number of successful extensions: 85
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)