Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_D10
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo...   138   8e-34
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    49   5e-07
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    45   1e-05
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    31   0.19 
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    29   0.58 
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ...    28   1.3  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   1.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   5.4  
SPAC5H10.03 |||phosphoglycerate mutase family|Schizosaccharomyce...    25   7.2  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   7.2  
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c...    25   7.2  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    25   9.5  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    25   9.5  

>SPBC1861.08c |||U2 snRNP-associated protein Lea1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 239

 Score =  138 bits (333), Expect = 8e-34
 Identities = 63/125 (50%), Positives = 87/125 (69%)
 Frame = +2

Query: 44  ELDLRGYKIPQIENLGATLDQFDTIDFSDNDIRKLDGFPLLKRLKCILLNNNRIVRIGEN 223
           ELDLR Y+IP IENLG   D  D IDF+DNDIR L  FP +KRL+ +L  NNRI  I  +
Sbjct: 22  ELDLRWYQIPIIENLGVLRDVHDAIDFTDNDIRYLGNFPRMKRLQTLLCGNNRITAIAPD 81

Query: 224 LEHYIPNLESVILTNNNISELGDLDPLSTLPKLRTLSLMHNPVANKNHYRAYVAFKMPEL 403
           +   +PNL+++ L  N++ E+ DLDPL++ P+L  LS + NPVA K +YR Y+ +++P L
Sbjct: 82  IGKVLPNLKTLSLAQNHLQEIADLDPLASCPQLTNLSCIDNPVAQKQYYRLYLIWRIPSL 141

Query: 404 RLLDF 418
            +LDF
Sbjct: 142 HILDF 146



 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 22/41 (53%), Positives = 26/41 (63%)
 Frame = +3

Query: 525 PGGNMPDPKVTNLTPQEIHKIREAIKNASSLQEVERLTRML 647
           P  N P      LTP+E  KI+EAIKNASS+ E+ RL  ML
Sbjct: 192 PEANSPITTGYTLTPEEREKIKEAIKNASSIAEINRLEAML 232


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 49.2 bits (112), Expect = 5e-07
 Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
 Frame = +2

Query: 47  LDLRGYKIPQIENLGATLDQFDTIDFSDNDIRKLDGFPLLKRLKCILLNNNRIVRIGENL 226
           L ++  +I Q ENL         +  S N +    G  +L+ L+ + ++NN I  +  + 
Sbjct: 197 LSIQSNRITQFENLACLSHCLRELYVSHNGLTSFSGIEVLENLEILDVSNNMIKHL--SY 254

Query: 227 EHYIPNLESVILTNNNISELGDL-DPLSTLPKLRTLSLMHNPVANKNH--YRAYVAFKMP 397
              + NL  +  +NN +S   ++ D LS L KL T+    NP+   N   YR  V   +P
Sbjct: 255 LAGLKNLVELWASNNELSSFQEIEDELSGLKKLETVYFEGNPLQKTNPAVYRNKVRLCLP 314

Query: 398 ELRLLD 415
           +LR +D
Sbjct: 315 QLRQID 320


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
 Frame = +2

Query: 191 NNNRIVRIGENLEHYIPNLESVILTNNNISELGDLDPLS---TLPKLRTLSLMHNPV--- 352
           NN + V     L    P L ++ L NN I+ L DLDP S    LP+L+ L L+ NP+   
Sbjct: 224 NNLQSVTAVTTLAQTWPKLLNLSLANNRITSLSDLDPWSPKTKLPELQELVLVGNPIVTT 283

Query: 353 -ANK-NHYRAYVAFKMPELRLLD 415
            AN+   Y+  +  + P+LRLLD
Sbjct: 284 FANRAMDYQREMVSRFPKLRLLD 306


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 22/101 (21%), Positives = 48/101 (47%)
 Frame = +2

Query: 29  LVGTXELDLRGYKIPQIENLGATLDQFDTIDFSDNDIRKLDGFPLLKRLKCILLNNNRIV 208
           L G  +L     +I ++    + L + + +   +N+I +++    L+ L  + L+NN++ 
Sbjct: 711 LDGLLKLSACNNRIKELSFTNSNLHRLEELLLGNNEIEEIEEISSLQNLMVLQLDNNKLT 770

Query: 209 RIGENLEHYIPNLESVILTNNNISELGDLDPLSTLPKLRTL 331
            +       + +L  + ++NN I +L     +   P LRTL
Sbjct: 771 NL--KASQPMIHLRILRISNNAIHQL----EVDQFPHLRTL 805


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 191 NNNRIVRIGENLEHYIPNLE-SVILTNNNISELGDLDPLSTLPKLRTLSLMHNPVANKNH 367
           NN   + I    E +I N   S   T++N+S  G L P  T    R L+ + NP  N++H
Sbjct: 511 NNLPSLAISPVSEGFIQNATISTPSTSSNLSIAGSLTPSKTSRIYRGLAPLKNPEFNEDH 570

Query: 368 YR 373
            +
Sbjct: 571 VK 572


>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 485

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
 Frame = +2

Query: 62  YKIPQIENLGATLDQFDT-IDFSDNDIRKLDGFPLLKRLKCILLNNNRIVRIGENLEHYI 238
           +K+P I + G+      T ++ +D      D      R +  LL     + +  + E   
Sbjct: 241 HKLPVIASTGSACKSDPTRVNIADISATSEDPLSRATRRRLRLLGIMEGIPVVFSTEKPD 300

Query: 239 PNLESVILTNNNISELGDLDPLSTLPKLR 325
           P   S++  +    E GD+D LS LP+ R
Sbjct: 301 PRKASLLPLSEEEFEKGDVDELSALPEFR 329


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 101 DQFDTIDFSDNDIRK--LDGFPLLKRLKCILLNNNRIVRIGE 220
           DQ   I +S  ++ +  ++GFPL+KR     LN  +I++I E
Sbjct: 4   DQIHKITYSGVEVFEYTINGFPLMKRCHDNWLNATQILKIAE 45


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -2

Query: 245 NLVYNVPNSLLSSRSCYYSIEYISTFLAVENRQAF 141
           +L YN+P+ L+   SC   I+ I+  L +++ Q+F
Sbjct: 744 HLGYNIPSQLMELASCLQRIQLIAMCL-IDSVQSF 777


>SPAC5H10.03 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 219

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 558 NLTPQEIHKIREAIKNASSLQEVERLTRMLQ 650
           N+ P E H IR+ +  +  +++ E L + L+
Sbjct: 20  NVGPDEDHNIRDPVLTSEGIEQCEALAKELE 50


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 231 CSKFSPILTILLLFNRIHFNLFSSGKPSSFLMSLSEKSIVSN 106
           C  F P L  L  F  +HFN+ +   P    MSL  +  +S+
Sbjct: 289 CLIFFPFLFFLFWFY-MHFNILTISGPGDSFMSLEFQETLSD 329


>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 585 IREAIKNASSLQEVERLTRML 647
           IRE I   +SLQEVE +T+ L
Sbjct: 139 IRERIDQVASLQEVESVTQAL 159


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 83  NLGATLDQFDTIDFSDNDIRKLDG 154
           N GA   Q +TID  D ++  +DG
Sbjct: 32  NFGAKAPQVNTIDEGDENLEAIDG 55


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 522 VPGGNMPDPKVTNLTPQEIHKIREAIKNASSLQEVER 632
           VP  N PD    N+ P  I K+RE    +++  +V R
Sbjct: 703 VPKNNQPDLVNENIAPNLISKLRELGSLSAAACDVTR 739


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,876
Number of Sequences: 5004
Number of extensions: 50952
Number of successful extensions: 175
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)