Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_D08
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   1.6  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    26   3.8  
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    26   3.8  
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    25   6.6  
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch...    25   6.6  
SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.6  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   6.6  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    25   8.8  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 26/92 (28%), Positives = 39/92 (42%)
 Frame = +2

Query: 329  KYQISWTEEPAKARSGVHQINILDEEGWASLRRARRADPAASVAPLLAIQLSHPGSYSGP 508
            +Y +   E P    + V ++N  D+    SL  A    P    APL+    + P +YS  
Sbjct: 1296 RYGLKLVEAPIHEIAAVGELNPFDQVSIISL--ALDPPPIPERAPLV----NDPVNYSKN 1349

Query: 509  WVNSEILATFISILVAYTALRNKSKILALSNY 604
            W N +IL  F  IL    A      I A+ ++
Sbjct: 1350 WWNVKILEHFDFILDTEAASTFPKSITAVYSW 1381


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 200 RXVTQIAYITEFTLKCDNTLPENYGLYAEVDGKSL 304
           + V  + Y+TEF+     T P ++GL   +DG SL
Sbjct: 368 KVVFDLKYVTEFS-----TSPNDFGLIPVIDGSSL 397


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 529 QYLGVHPWPGVAARMTKLYGE 467
           ++   HPWPG   R T+ Y E
Sbjct: 278 KFFAQHPWPGTRHRETREYTE 298


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
 Frame = +2

Query: 302 LTAARIGENKYQISWTEEPAK--------ARSG-VHQINILDEEGWASLRRARRADPAAS 454
           + A  +G N +++ + E+ +K        ARSG  +    L +E   + +RAR+ DP  S
Sbjct: 283 MKAMELGHNSWRLEYGEDRSKRMRNKSPMARSGRFNDAESLGQEDKPNFKRARKIDP-RS 341

Query: 455 VAPLLAI 475
           V P  A+
Sbjct: 342 VRPGAAL 348


>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
           Spo14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 29  NCSLKFLKLDLPLRSQITKWSQKV 100
           +CS++F+ LDL   SQ+ K S  V
Sbjct: 278 DCSIRFMSLDLTKLSQVYKHSLPV 301


>SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 114 DNINKTFCDHFVICDLKGKSNFKNLRLQFSLLYSRP 7
           D I K++ +  +  DLKG S F     +  +LY+ P
Sbjct: 71  DEIRKSYGEKKITIDLKGTSFFGKSPQEAKVLYATP 106


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 111 NINKTFCDHFVICDLKGKSNFKNLRLQFSLLYSR 10
           N N +  D +  C L   S+F+N  L + +LY +
Sbjct: 498 NYNNSAIDSYAKCTLNLDSDFENGILTYEILYKK 531


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = -2

Query: 201 RGI*TSEI*SFNFRVLTGFGANTADKSDCDNINKTFCDHFVICDLKGKSNFKNLRLQFSL 22
           +GI  S   SF+ +V +GF  +            T    F I +   +S F+NL  QFSL
Sbjct: 276 QGIPNSSFSSFS-QVASGFSQSQNVNDPSSIFGPTVASGFGIQNQPQQSAFQNLNTQFSL 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,246,929
Number of Sequences: 5004
Number of extensions: 41689
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)