Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_D08
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-19|CAB60502.1|  159|Caenorhabditis elegans Hypothetical...    74   9e-14
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    29   2.7  

>AL132860-19|CAB60502.1|  159|Caenorhabditis elegans Hypothetical
           protein Y56A3A.21 protein.
          Length = 159

 Score = 73.7 bits (173), Expect = 9e-14
 Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 1/124 (0%)
 Frame = +2

Query: 221 YITEFTLKCDNTLPENYGLYAEVDGKSLTAARIGEN-KYQISWTEEPAKARSGVHQINIL 397
           +ITEFTL+C N  P+N    AEV+G+ +  +   E  K+Q+SWT E   A +    INI 
Sbjct: 42  FITEFTLQCSNN-PKNIQYTAEVNGRLIPVSISDETAKFQVSWTLEHKDAGAQTFNINIF 100

Query: 398 DEEGWASLRRARRADPAASVAPLLAIQLSHPGSYSGPWVNSEILATFISILVAYTALRNK 577
           DEEG A   +    +P     PL  +Q SH G  +   ++SE +A  I ++  Y A+R K
Sbjct: 101 DEEGAAQYAK----NPVTK--PLFTVQQSHGGLATKSPISSETVAVIIVVIGLYYAIRQK 154

Query: 578 SKIL 589
           ++++
Sbjct: 155 TELV 158


>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 245 CDNTLPENYGLYAEVDGKSLTAARIG 322
           CD  LPE+YGL   VDG       IG
Sbjct: 516 CDQCLPEHYGLSEHVDGCKACDCDIG 541


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,408,860
Number of Sequences: 27780
Number of extensions: 233890
Number of successful extensions: 594
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)