Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_D06
         (568 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   3.2  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    22   4.2  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   7.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   9.7  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    21   9.7  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   9.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   9.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   9.7  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 565 GRLGGTAPRLRVPTKRSRDQHY 500
           G +GG+ PR+  P   +R + Y
Sbjct: 103 GVIGGSKPRVATPEVENRIEQY 124


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 18  CGDVNCIGTGRVXSVGRDVCD 80
           CGD NCI  G   +  +D  D
Sbjct: 124 CGDGNCIERGLFCNGEKDCSD 144


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -1

Query: 82  RSHTSRPTLXTRPVPMQFTSPHPA 11
           RSH        RP P    +P PA
Sbjct: 248 RSHQPATKSKPRPAPASRNAPEPA 271


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 509 VPRPLGRYSETGCGPPEP 562
           +P    R+S TG  PP P
Sbjct: 217 LPSDFYRFSPTGLIPPHP 234


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 509 VPRPLGRYSETGCGPPEP 562
           +P    R+S TG  PP P
Sbjct: 109 LPSDFYRFSPTGLIPPHP 126


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 9   GAGCGDVNCIGTG 47
           GA CG ++ IG+G
Sbjct: 185 GAACGRIHPIGSG 197


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 9   GAGCGDVNCIGTG 47
           GA CG ++ IG+G
Sbjct: 499 GAACGRIHPIGSG 511


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 9   GAGCGDVNCIGTG 47
           GA CG ++ IG+G
Sbjct: 732 GAACGRIHPIGSG 744


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 9   GAGCGDVNCIGTG 47
           GA CG ++ IG+G
Sbjct: 732 GAACGRIHPIGSG 744


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,889
Number of Sequences: 336
Number of extensions: 1903
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)