Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_D06
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    29   0.63 
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    27   1.5  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    27   1.9  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    26   4.4  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    25   5.9  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   5.9  

>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 130 LVTLPADHVSALHYAGRCGRTGPSRVRR 213
           LV++P    SA   AGR GR GP +  R
Sbjct: 728 LVSVPCSRASADQRAGRAGRVGPGKCFR 755


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = -2

Query: 552 GPHPVSEYRPR---GRGTSIIFASLENLFGVHTDVECNGFKWI-RLERLEFDDGLSA 394
           GP  +   +P    G G  ++F   ++  G+H+ V+ +GF++   L+ +E +DG S+
Sbjct: 37  GPSEMLSMKPDVKGGFGDRMMFIPFQSDLGLHSPVDRSGFEYCGYLDAIESEDGDSS 93


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 130 LVTLPADHVSALHYAGRCGRTGPSRVRR 213
           L+  P     A   +GR GRTGP +  R
Sbjct: 820 LIVTPISQAQARQRSGRAGRTGPGKCYR 847


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 94  EFFNRIILSDRVLVTLPADHVSALHYAGRCGRTGP 198
           + +N  +  D + VT P    +A   AGR GRTGP
Sbjct: 789 KMYNSKLGIDTLQVT-PISQANANQRAGRAGRTGP 822


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 94  EFFNRIILSDRVLVTLPADHVSALHYAGRCGRTGPSRVRR 213
           + +N  I  + +LV+ P    SA   AGR GRT P +  R
Sbjct: 382 KIYNPRIRVESLLVS-PISKASAQQRAGRAGRTRPGKCFR 420


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 70  SRPTLXTRPVPMQFTSPHPAPK 5
           S P L  +PVP+ ++ P P  K
Sbjct: 672 SSPALPVQPVPLAYSKPAPTTK 693


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,932,045
Number of Sequences: 5004
Number of extensions: 31125
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)