Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_D06
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    24   0.93 
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    24   0.93 
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    24   0.93 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.6  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 530 YSETGCGPPE 559
           Y  TGCGPPE
Sbjct: 15  YDMTGCGPPE 24


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 530 YSETGCGPPE 559
           Y  TGCGPPE
Sbjct: 15  YDMTGCGPPE 24


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 530 YSETGCGPPE 559
           Y  TGCGPPE
Sbjct: 15  YDMTGCGPPE 24


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -2

Query: 438 WIRLERLEFDDGLSAA*YCLIAARVASVCIGANRF 334
           W+ +  L+    L    + L  A    +CIG  RF
Sbjct: 311 WVAINELQDSFWLEQYSWALFKAMSHMLCIGYGRF 345


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -2

Query: 438 WIRLERLEFDDGLSAA*YCLIAARVASVCIGANRF 334
           W+ +  L+    L    + L  A    +CIG  RF
Sbjct: 279 WVAINELQDSFWLEQYSWALFKAMSHMLCIGYGRF 313


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 421 PLKTDPLKPVTFHIGMNSKQI 483
           P  T+P   +TF+I M  K +
Sbjct: 230 PCCTEPYSDITFNITMRRKTL 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,316
Number of Sequences: 438
Number of extensions: 2504
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)