Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P07_F_D05
(503 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 81 1e-16
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 81 1e-16
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 29 0.52
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 26 3.7
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 25 4.9
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 6.5
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 25 6.5
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo... 25 8.5
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 80.6 bits (190), Expect = 1e-16
Identities = 37/50 (74%), Positives = 42/50 (84%)
Frame = +2
Query: 173 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 322
R RGGN K+RALRLD+GNFSWGSE ++KTRII V Y+ SNNELVRT TL
Sbjct: 47 RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTL 96
Score = 69.7 bits (163), Expect = 2e-13
Identities = 31/44 (70%), Positives = 36/44 (81%)
Frame = +1
Query: 34 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIH 165
MGI+RD HKR ATG KRA RKKRK+ELGR +NTR+GP+RIH
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIH 44
Score = 45.6 bits (103), Expect = 4e-06
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +3
Query: 252 LAKPVSLMLCIMHLTMNWCVQ-RPLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLT 425
++K ++ H + N V+ L K+AIV +DA PFR WYE+HY + +G KG K T
Sbjct: 72 VSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKAT 129
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 80.6 bits (190), Expect = 1e-16
Identities = 37/50 (74%), Positives = 42/50 (84%)
Frame = +2
Query: 173 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 322
R RGGN K+RALRLD+GNFSWGSE ++KTRII V Y+ SNNELVRT TL
Sbjct: 47 RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTL 96
Score = 69.7 bits (163), Expect = 2e-13
Identities = 31/44 (70%), Positives = 36/44 (81%)
Frame = +1
Query: 34 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIH 165
MGI+RD HKR ATG KRA RKKRK+ELGR +NTR+GP+RIH
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIH 44
Score = 45.6 bits (103), Expect = 4e-06
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +3
Query: 252 LAKPVSLMLCIMHLTMNWCVQ-RPLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLT 425
++K ++ H + N V+ L K+AIV +DA PFR WYE+HY + +G KG K T
Sbjct: 72 VSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKAT 129
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 28.7 bits (61), Expect = 0.52
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = -1
Query: 218 CPDAAHGT*YF--HHVNEXEWIR*GPSLVFAAGRPNSYFLFLRMGARFPPV 72
CPD + G Y V + ++R PS+++A ++ LF+R+ ++PP+
Sbjct: 307 CPDPSQGFNYCIREAVFQGYFVRPLPSIIWALFEFSAVALFIRLKMKYPPL 357
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 3.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 22 DPTKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAAN 138
+ TK G + RRA A RKK K + GRP +N
Sbjct: 3 ETTKSGSKKSGQTSRRAIHSCLACRRKKLKCDHGRPCSN 41
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 25.4 bits (53), Expect = 4.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 294 LDALYTTSMIRVLRVEHSDPQEKLPVSRR 208
L+ + T S +V R H DP KLP RR
Sbjct: 193 LEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.0 bits (52), Expect = 6.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 191 TKYRALRLDTGNFSWGSECSTRKTRI 268
T YRA+ LDTG+ E + K RI
Sbjct: 1133 TVYRAVNLDTGDLMAVKEVALHKPRI 1158
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 25.0 bits (52), Expect = 6.5
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 49 DHWHKRRATGGKRAPIRKKRKYE 117
D W +A G +PIR+ ++Y+
Sbjct: 758 DEWKASKAFGANDSPIRENKRYK 780
>SPBC530.01 |gyp1||GTPase activating protein Gyp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 24.6 bits (51), Expect = 8.5
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 22 DP-TKMGISRDHWHKRRATGGKRAPIR 99
DP T + SR H H+ R+T K P R
Sbjct: 27 DPVTVLDRSRTHHHRGRSTSSKAQPFR 53
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,086,555
Number of Sequences: 5004
Number of extensions: 42584
Number of successful extensions: 111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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