Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P07_F_D05
(503 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 93 1e-19
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 93 2e-19
01_02_0013 + 10162478-10163581 29 1.6
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 28 3.7
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 28 4.9
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 28 4.9
05_05_0049 - 21895172-21895181,21895297-21896717 28 4.9
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157... 27 6.5
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 27 8.6
03_06_0019 - 31078669-31080081 27 8.6
03_01_0501 + 3776369-3777337 27 8.6
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 93.1 bits (221), Expect = 1e-19
Identities = 45/65 (69%), Positives = 50/65 (76%)
Frame = +2
Query: 128 PLQTPGSALSESTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 307
P T S+ R RGGN K+RALRLDTGN+SWGSE TRKTRI+DVVYNASNNELV
Sbjct: 33 PANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELV 92
Query: 308 RTKTL 322
RT+TL
Sbjct: 93 RTQTL 97
Score = 62.5 bits (145), Expect = 2e-10
Identities = 29/42 (69%), Positives = 32/42 (76%)
Frame = +1
Query: 34 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR 159
MGISRD HKRRATGGK+ RKKRKYELGR ANT+L +
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNK 42
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/43 (55%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Frame = +3
Query: 321 LVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLT--EAEEAI 443
LVK+AIV VDA PF+QWY +HY + +GRKK A +AE A+
Sbjct: 97 LVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAEHAL 139
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 92.7 bits (220), Expect = 2e-19
Identities = 45/65 (69%), Positives = 50/65 (76%)
Frame = +2
Query: 128 PLQTPGSALSESTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 307
P T S+ R RGGN K+RALRLDTGN+SWGSE TRKTRI+DVVYNASNNELV
Sbjct: 33 PANTKLSSNKTVRRVRVRGGNLKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELV 92
Query: 308 RTKTL 322
RT+TL
Sbjct: 93 RTQTL 97
Score = 62.5 bits (145), Expect = 2e-10
Identities = 29/42 (69%), Positives = 32/42 (76%)
Frame = +1
Query: 34 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR 159
MGISRD HKRRATGGK+ RKKRKYELGR ANT+L +
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNK 42
Score = 50.4 bits (115), Expect = 8e-07
Identities = 22/40 (55%), Positives = 29/40 (72%)
Frame = +3
Query: 321 LVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEA 440
LVK+AIV VDA PF+QWY +HY + +GRKK A + + A
Sbjct: 97 LVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAA 136
>01_02_0013 + 10162478-10163581
Length = 367
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 186 EILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQRPL 323
E +S RC P+ G R + A SL + ++HL +C RPL
Sbjct: 240 EYMSPERCA--PMAMAGARVARAADVWSLGITVLHLYQGYCPARPL 283
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 28.3 bits (60), Expect = 3.7
Identities = 19/64 (29%), Positives = 25/64 (39%)
Frame = -3
Query: 237 PQEKLPVSRRSARYLVFPPRERXGVDSLRAEPGVCSGTP*LILPLLAYGRTFPTGGPSLM 58
P K P S A+ PP ER + +A + TP + P A+ PSL
Sbjct: 138 PPAKAP-SHSHAKTPSMPPAERPALPPTKAPAAISPATPPQLSPANAHSTHHHAKPPSLP 196
Query: 57 PVIP 46
P P
Sbjct: 197 PAEP 200
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +1
Query: 46 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHS 168
R H T G+ P + Y LG P A +GP +H+
Sbjct: 210 RPETHTFHLTVGEMVPTLQDVSYLLGLPIAGAAVGPTMVHA 250
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +2
Query: 227 FSWGSECSTRKTRIIDVVYNASNNELVRTKTLGQE 331
F W C+T ++ V + S +EL+ T + Q+
Sbjct: 728 FQWSGRCTTEDFKLNQVCIDGSRDELLETDVIRQD 762
>05_05_0049 - 21895172-21895181,21895297-21896717
Length = 476
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 123 ASRCKHQARPSANPLRFVHVVEILSTVRCV 212
A C+H+ RP+ +PL F + ++ ++T V
Sbjct: 324 AVNCRHRLRPAISPLYFGNAIQSVATTATV 353
>04_03_0867 -
20414999-20415160,20415255-20415384,20415515-20415702,
20415967-20416001,20416363-20416579,20416737-20416820,
20417609-20417875,20417954-20418061,20418163-20418249,
20418629-20419399
Length = 682
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +3
Query: 195 STVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMN 302
+ + C+W + SLG R Q++K + L ++ + +N
Sbjct: 286 TVIPCMWLVIASLGRRLRQISKEAHISLAMLTVYLN 321
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 61 KRRATGGKRAPIRKKRKYELGRPAA 135
KRR GG+RA R+K + E GR A
Sbjct: 45 KRRRGGGRRAAGRRKEEEEAGRRKA 69
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 61 KRRATGGKRAPIRKKRKYELGRPAA 135
KRR GG+RA R+K + E GR A
Sbjct: 81 KRRRGGGRRAAGRRKEEEEAGRRKA 105
>03_06_0019 - 31078669-31080081
Length = 470
Score = 27.1 bits (57), Expect = 8.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 142 WCLQRDALTHTSSSCVWAH 86
WC QR L H S++C +H
Sbjct: 340 WCPQRRVLAHASTACFVSH 358
>03_01_0501 + 3776369-3777337
Length = 322
Score = 27.1 bits (57), Expect = 8.6
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Frame = -3
Query: 279 TTSMIRVLRVEHSDPQ--EKLPVSRRSARY-LVFPPRERXGVDSLRAEPGVCSGTP*LIL 109
T++ + L V+ P+ E P+ R R + PP E +D+ G+ +P L+
Sbjct: 44 TSTTLGSLEVDKGAPRAAEAPPMRRMVPRTPTMTPPNEPEAIDAWALMAGLEEHSPLLVP 103
Query: 108 PLLAYGRTFPTGG--PSLMPVIPTNTHLSWVKKENTRP 1
P + +FP P L T L V+K+ P
Sbjct: 104 PFARHSFSFPITAVPPELAAASRKVTPLPLVEKKKASP 141
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,190,084
Number of Sequences: 37544
Number of extensions: 307942
Number of successful extensions: 830
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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