Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_D05
         (503 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal prote...    91   6e-19
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis...    33   0.12 
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis...    33   0.12 
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis...    33   0.12 
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis...    33   0.12 
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis...    33   0.12 
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res...    33   0.12 
U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical p...    28   4.4  
L14745-8|AAA27923.1|  244|Caenorhabditis elegans Tetraspanin fam...    28   4.4  

>U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 8 protein.
          Length = 208

 Score = 90.6 bits (215), Expect = 6e-19
 Identities = 40/50 (80%), Positives = 46/50 (92%)
 Frame = +2

Query: 173 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 322
           R+RGGN KYRALRLD+GNFSW SE +TRKTRI+D +YNA+NNELVRTKTL
Sbjct: 47  RTRGGNEKYRALRLDSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTL 96



 Score = 89.4 bits (212), Expect = 1e-18
 Identities = 44/86 (51%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
 Frame = +3

Query: 249 QLAKPVSLMLCIMHLTMNWCVQ-RPLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLT 425
           Q  +   ++  + + T N  V+ + LVK AI+ VDA PFRQWYE+HY LPL RKK AKL+
Sbjct: 71  QTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLARKKNAKLS 130

Query: 426 EAEEAIINKKRSQKTAXKYLARQRLA 503
           E + AI+NKKRS  T  KY  RQ+ A
Sbjct: 131 EEDNAILNKKRSHHTMKKYTERQKTA 156



 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 27/43 (62%), Positives = 32/43 (74%)
 Frame = +1

Query: 34  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRI 162
           MGISRD WHKR  TG  +    KKRK+ELGRPAANT++G  R+
Sbjct: 1   MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRV 43


>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
           resistance related protein1 protein.
          Length = 1540

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +2

Query: 149 ALSESTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 307
           A  E +P  S        A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 595 AAEEMSPQTSIAYGGTDSAIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform e protein.
          Length = 1534

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +2

Query: 149 ALSESTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 307
           A  E +P  S        A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 595 AAEEMSPQTSIAYGGTDSAIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform c protein.
          Length = 1534

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +2

Query: 149 ALSESTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 307
           A  E +P  S        A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 595 AAEEMSPQTSIAYGGTDSAIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform b protein.
          Length = 1534

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +2

Query: 149 ALSESTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 307
           A  E +P  S        A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 595 AAEEMSPQTSIAYGGTDSAIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform a protein.
          Length = 1528

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +2

Query: 149 ALSESTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 307
           A  E +P  S        A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 595 AAEEMSPQTSIAYGGTDSAIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
           resistance-associatedprotein protein.
          Length = 1534

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +2

Query: 149 ALSESTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 307
           A  E +P  S        A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 595 AAEEMSPQTSIAYGGTDSAIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical
           protein R144.2a protein.
          Length = 823

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 297 MNWCVQRPLVKNAIVVVDATPFRQWYESHYT 389
           M+W V++ L ++      A P+RQWY S  T
Sbjct: 697 MDWHVKQNLARHGSNNSAAVPYRQWYPSTST 727


>L14745-8|AAA27923.1|  244|Caenorhabditis elegans Tetraspanin family
           protein 1 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -3

Query: 306 TNSLLDALYTTSMIRVLRV 250
           TNSL+DA+YTT+ +  L++
Sbjct: 133 TNSLIDAMYTTNSVNDLKI 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,722,478
Number of Sequences: 27780
Number of extensions: 253499
Number of successful extensions: 767
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)