Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_C24
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    26   5.4  
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.2  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    25   7.2  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    25   7.2  

>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = -1

Query: 507 NIYIES*VDKMTQNSYNIHNNVQIPNVNLIGHSIRLVISYAVLKHVSNDLRHY*KIFVRF 328
           N Y++    K+  NS+++H+   I N +  G + +++   A +   S  ++H  +IF  F
Sbjct: 90  NTYLKDRSIKVEGNSFDVHSANSIHNYSFNGKTFKIL--QATVLEASEIMQHL-QIFSLF 146

Query: 327 F 325
           F
Sbjct: 147 F 147


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 531 SSQRISNSNIYIES*VDKMTQNSYNIHNNVQ 439
           SS +  N  I   S +DK+T N   + NN+Q
Sbjct: 339 SSGKADNLTIKSSSNIDKVTSNDLYLDNNLQ 369


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 226 VICMYSLICRPLFTYCLAFCDWFYLSCFVYKFNEKSHKDLSIMPQ 360
           V CM    C+ L        D       V +FN K+H+ +S +PQ
Sbjct: 295 VRCMAVFECKSLDVLISGGMDMMLAVIPVRQFNRKNHRMISAVPQ 339


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/47 (21%), Positives = 25/47 (53%)
 Frame = +1

Query: 349 IMPQIVRDMFQNGIAYDEPDRMPDKINIRNLDIIMYVVAILGHFVDL 489
           ++P+ V+  +   ++   PD++P + ++ +  I     +IL H  +L
Sbjct: 644 VLPKKVKIAYMKAVSRVHPDKLPQQTSVEHQLIAESAFSILNHAWEL 690


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,485,534
Number of Sequences: 5004
Number of extensions: 50057
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)