Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_C24
         (651 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY534244-1|AAT07093.1|  641|Homo sapiens XK-related protein 6 pr...    50   1e-05
AJ301560-1|CAC82736.1|  287|Homo sapiens hypothetical protein pr...    50   1e-05
BC068499-1|AAH68499.1|  351|Homo sapiens THO complex 3 protein.        30   6.2  
BC066325-1|AAH66325.1|  327|Homo sapiens THOC3 protein protein.        30   6.2  
BC006849-1|AAH06849.1|  351|Homo sapiens THO complex 3 protein.        30   6.2  

>AY534244-1|AAT07093.1|  641|Homo sapiens XK-related protein 6
           protein.
          Length = 641

 Score = 49.6 bits (113), Expect = 1e-05
 Identities = 25/73 (34%), Positives = 42/73 (57%)
 Frame = +1

Query: 403 PDRMPDKINIRNLDIIMYVVAILGHFVDLGLDINIAVRYSLAGMVTEFGWTLAFILIPAF 582
           P+  P ++    LD +  V+A+L  F D+G D+ +A+ Y   G    FG TL F+L+P+ 
Sbjct: 115 PEPPPPQVERPWLDCLWIVLALLVFFGDVGTDLWLALDYYRKGDYVYFGLTLFFVLVPSL 174

Query: 583 VNTAVSIRLYAQD 621
           +  ++S R + QD
Sbjct: 175 LVQSLSFRWFVQD 187


>AJ301560-1|CAC82736.1|  287|Homo sapiens hypothetical protein
           protein.
          Length = 287

 Score = 49.6 bits (113), Expect = 1e-05
 Identities = 25/73 (34%), Positives = 42/73 (57%)
 Frame = +1

Query: 403 PDRMPDKINIRNLDIIMYVVAILGHFVDLGLDINIAVRYSLAGMVTEFGWTLAFILIPAF 582
           P+  P ++    LD +  V+A+L  F D+G D+ +A+ Y   G    FG TL F+L+P+ 
Sbjct: 115 PEPPPPQVERPWLDCLWIVLALLVFFGDVGTDLWLALDYYRKGDYVYFGLTLFFVLVPSL 174

Query: 583 VNTAVSIRLYAQD 621
           +  ++S R + QD
Sbjct: 175 LVQSLSFRWFVQD 187


>BC068499-1|AAH68499.1|  351|Homo sapiens THO complex 3 protein.
          Length = 351

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 17/67 (25%), Positives = 34/67 (50%)
 Frame = -1

Query: 600 RDRCIHKSRYKNKGEGPAELCHHSSQRISNSNIYIES*VDKMTQNSYNIHNNVQIPNVNL 421
           +DR + ++ Y+  G+   +LC H     SN ++++ +  DK T   +++     I  VN 
Sbjct: 86  KDRLVKENNYRGHGDSVDQLCWHP----SNPDLFVTASGDK-TIRIWDVRTTKCIATVNT 140

Query: 420 IGHSIRL 400
            G +I +
Sbjct: 141 KGENINI 147


>BC066325-1|AAH66325.1|  327|Homo sapiens THOC3 protein protein.
          Length = 327

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 17/67 (25%), Positives = 34/67 (50%)
 Frame = -1

Query: 600 RDRCIHKSRYKNKGEGPAELCHHSSQRISNSNIYIES*VDKMTQNSYNIHNNVQIPNVNL 421
           +DR + ++ Y+  G+   +LC H     SN ++++ +  DK T   +++     I  VN 
Sbjct: 86  KDRLVKENNYRGHGDSVDQLCWHP----SNPDLFVTASGDK-TIRIWDVRTTKCIATVNT 140

Query: 420 IGHSIRL 400
            G +I +
Sbjct: 141 KGENINI 147


>BC006849-1|AAH06849.1|  351|Homo sapiens THO complex 3 protein.
          Length = 351

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 17/67 (25%), Positives = 34/67 (50%)
 Frame = -1

Query: 600 RDRCIHKSRYKNKGEGPAELCHHSSQRISNSNIYIES*VDKMTQNSYNIHNNVQIPNVNL 421
           +DR + ++ Y+  G+   +LC H     SN ++++ +  DK T   +++     I  VN 
Sbjct: 86  KDRLVKENNYRGHGDSVDQLCWHP----SNPDLFVTASGDK-TIRIWDVRTTKCIATVNT 140

Query: 420 IGHSIRL 400
            G +I +
Sbjct: 141 KGENINI 147


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,396,660
Number of Sequences: 237096
Number of extensions: 1557632
Number of successful extensions: 7118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7118
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)