Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_C24
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    26   0.27 
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    25   0.63 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   1.9  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -1

Query: 609 QSYRDRCIHKSRYKNKGEGPAELCHHSSQRISNSNIYIES*VDKMTQNSYNIHNN 445
           + YR+R   +SR + + E   E    SS  +SN  I+  +  +    N+YN +NN
Sbjct: 57  RKYRERSKERSRDRTERERSREPKIISS--LSNKTIHNNNNYNNNNYNNYNYNNN 109


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = -1

Query: 609 QSYRDRCIHKSRYKNKGEGPAE---LCHHSSQRISNSNIYIES*VDKMTQNSYNIHNNVQ 439
           + YR+R   +SR + + E   E   +   S++ I N+N Y  +  +   +  YNI+   Q
Sbjct: 57  RKYRERSKERSRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNYKKLYYNINYIEQ 116

Query: 438 IP 433
           +P
Sbjct: 117 VP 118


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 403 PDRMPDKINIRNLDIIMY 456
           PDR PD+    N D I+Y
Sbjct: 329 PDRTPDQCLFYNTDFIIY 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,174
Number of Sequences: 438
Number of extensions: 3563
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)