Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P07_F_C22
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 27 2.3
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 27 2.3
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 27 3.1
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 3.1
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 27 3.1
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 25 7.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.2
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 25 7.2
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch... 25 9.5
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 25 9.5
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 9.5
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 25 9.5
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 625 VFWAVSKPTSTSRTLLSVVNSISSRLTFVEVVSVGSATGLLL 500
V+WA+ T L++++S+ T +SV +A GLLL
Sbjct: 88 VWWAIRTITHLEIVGLNILSSLKYGSTLFSWISVANAFGLLL 129
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 81 PRHSTTMARHIGRITITT-PSVLTFGKACWTHI 176
P H+TT R I +I I PS+LT G +C HI
Sbjct: 553 PVHATT--RFIAQIAILELPSILTTGYSCVMHI 583
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 26.6 bits (56), Expect = 3.1
Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 5/108 (4%)
Frame = +2
Query: 47 LVLCGLLAAVSAAPQYYHGSSHWPYHHYDPFSPYVRESMLDTHSLWSNLAN-----EMQH 211
LV C + AA + + P + Y P + +S++ T +WSN+ + +M+H
Sbjct: 26 LVSCSVEDIEKAANDSFLWGPYRP-NLYVGIRPKIPDSLM-TGLMWSNVDDYARFSKMRH 83
Query: 212 LGQHDEGAVVEVPQHYKRRTRGRRQVSDIYSPAWLRTERHQRESEKWS 355
+H + +HY R G++ + D L T+ + W+
Sbjct: 84 SAEHGDDIGAFGWKHYDVRRGGQQVIDDFLMGIKLETDFVKLPEGNWA 131
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +3
Query: 477 LKQKQPEDSKRPVAEPTETTSTNVSREEMEFTTESNVRDVD 599
+K ++PE + +PV + ST + +E E T +++V +
Sbjct: 908 IKPQKPEPALKPVEGTADPKSTKRNHQETEKTADTDVSSTE 948
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -3
Query: 286 LSPSTRPSFIMLGNFNDSSFIMLSQVLHFVG--KVGPKR 176
LSPSTR + + F D ++L +V+ + KV P+R
Sbjct: 582 LSPSTRGIILCISGFTDKLHVLLEKVVAMMRDLKVHPQR 620
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 68 AAVSAAPQYYHGSSHWPYHHYDPFSP 145
A +A PQYY +P HY P P
Sbjct: 502 ATDAAKPQYYIPKDPYPVPHYYPQQP 527
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3
Query: 610 SKPTSTSRTLLSVVNSISSRLTFVEVVSVGSATGLLLSS 494
S PTSTS T+ S +S SS + +S S++ SS
Sbjct: 281 SSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSS 319
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 471 FPLKQKQPEDSKRPVAEPTETTSTNVSRE 557
F K + K P EPTE +N+S E
Sbjct: 885 FSFKAFGIDSKKSPTPEPTEMAESNISEE 913
>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
3|||Manual
Length = 872
Score = 25.0 bits (52), Expect = 9.5
Identities = 7/25 (28%), Positives = 16/25 (64%)
Frame = +2
Query: 119 YHHYDPFSPYVRESMLDTHSLWSNL 193
+ H+DP+S ++ ++ + H W+ L
Sbjct: 292 FFHFDPYSLFISNNLEEIHINWNIL 316
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 25.0 bits (52), Expect = 9.5
Identities = 30/117 (25%), Positives = 43/117 (36%)
Frame = +3
Query: 237 SLKFPSIINEGRVEGDKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNHYLKIQNLPW 416
+L+ P+I ++G V ++ L +V+ G M A SA + NLP
Sbjct: 157 NLRSPAIDSDGTVLAPIQTSNVDLGSQYYSSPHVRPAVGATM--AGSAMRTFPS--NLPL 212
Query: 417 DVNSEGSWVYEKDVLKITFPLKQKQPEDSKRPVAEPTETTSTNVSREEMEFTTESNV 587
S V I PL P TS +REE ++T SNV
Sbjct: 213 GHPPPPSDSANSSVTPIAAPLVVNGKVSGNPPYPAEIIPTSNVPNREEKDWTVTSNV 269
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 610 SKPTSTSRTLLSVVNSISSRLTFVEVVSVGSATGLLLSS 494
S PTS+S S + +ISS ++ + S S+ +LSS
Sbjct: 544 SIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSS 582
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = +3
Query: 483 QKQPEDSKRPVAEPTE---TTSTNVSREEME 566
Q P DSK P E E T++T VS E++E
Sbjct: 355 QATPADSKEPRKEEAEKPVTSATEVSSEKVE 385
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,796,529
Number of Sequences: 5004
Number of extensions: 58970
Number of successful extensions: 204
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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