Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_C20
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.08c |||COPII-coated vesicle component Erv46|Schizosacc...    28   0.93 
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   8.7  

>SPAC24B11.08c |||COPII-coated vesicle component
           Erv46|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -1

Query: 532 ELLDILDMYSLCILNSGSPTRLTKPGEVISAIDLSICTPQLAS 404
           ++LD+   +   I ++ S TRL+  GE+IS  DL I   Q  S
Sbjct: 87  DVLDVSGEFQRDIHHTVSKTRLSPSGEIISVDDLDIGNQQSIS 129


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 165 SDASSSLNLTFTLVELXRC 109
           SD++ S+N  FTL+E  RC
Sbjct: 778 SDSNFSMNTLFTLLEKARC 796


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,264,244
Number of Sequences: 5004
Number of extensions: 43374
Number of successful extensions: 123
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)