Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P07_F_C16
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 31 0.14
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc... 27 1.8
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 27 1.8
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 27 2.3
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 27 3.1
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar... 27 3.1
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 26 5.4
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 25 7.2
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo... 25 7.2
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 25 7.2
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 25 9.5
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 31.1 bits (67), Expect = 0.14
Identities = 18/86 (20%), Positives = 39/86 (45%)
Frame = -1
Query: 456 LFLEVVHLCVAVHDLYLHPKLTRYNDILISFYFKNVCVFFYLALDSRFFLGTFWSASTSF 277
+ L+ V+ +Y+ + R N ++I ++++C F Y A+ SR +++T
Sbjct: 309 MILDAVNFGCTFGGMYVLERFGRRNPLIIGGIWQSICFFIYSAVGSRALYHKNGTSNTRA 368
Query: 276 SYWCLFIIRRLSRIFCSGGSWRPTSF 199
+ I+ IF +W P ++
Sbjct: 369 G--AVMIVMACLFIFGFAQTWAPAAY 392
>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 329
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = -1
Query: 378 ILISF---YFKNVCVFFYLALDSRFFLGTFWSASTSFSYWCL 262
+LISF Y NV YL FF + T F +WCL
Sbjct: 77 LLISFTPIYVLNVLAICYLTYKDAFFKDYGAAEWTLFGFWCL 118
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = -1
Query: 378 ILISF---YFKNVCVFFYLALDSRFFLGTFWSASTSFSYWCL 262
+LISF Y NV YL FF + T F +WCL
Sbjct: 77 LLISFTPIYVLNVLAICYLKYKDAFFKNYGAAEWTLFGFWCL 118
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Frame = -1
Query: 414 LYLHPKLTRYNDILISFYFKNVCVFFYLALDSRFFL---GT--FWSASTSFSYWCLFI 256
LY L R N ++ F+++C F Y A+ R + GT + S + CLF+
Sbjct: 319 LYTIDNLGRRNPLIFGAAFQSICFFIYAAVGDRKLIYKNGTSDHRAGSVMIVFSCLFL 376
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 414 LYLHPKLTRYNDILISFYFKNVCVFFYLALDSR 316
LY L R N ++ F+++C F Y A+ R
Sbjct: 319 LYTIDNLGRRNPLIFGAAFQSICFFIYAAVGDR 351
>SPBC19C7.08c |||leucine carboxyl
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 681
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/39 (28%), Positives = 15/39 (38%)
Frame = -2
Query: 272 TGACSSSEDLAESFVLVAAGGRPRFLSSFDSGCVPLAFG 156
TG C + F + G L F GC+ +FG
Sbjct: 628 TGVCIEETEKRPVFTMFGISGMGNHLQIFGGGCICFSFG 666
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.8 bits (54), Expect = 5.4
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 112 SDDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAK 246
SD VV++K R + N + S ++K+G PAA TK +AK
Sbjct: 384 SDGIHLVVDEKSNFREE-NFQRAMSALMEKQGDDPAAMATKGNAK 427
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 465 KQHLFLEVVHLCVAVHDLYLHPKLTRYNDILISFYF 358
K+ + + L +V + LHP L + + IL+ YF
Sbjct: 475 KRRVLRRIKQLLFSVTPVALHPFLQKTSSILVDLYF 510
>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 5 GLVSRPAINSHGNSGIACCKQVLAKYLHYKLFSELCLTTVQ 127
GL+ +PAI +H ++ K+ + L YK+ LT Q
Sbjct: 98 GLLKKPAIETHASTSDVANKKPKKEKLPYKVIHAAHLTKPQ 138
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 154 RPKANGTQPESKELKKRGRPPAATRTKDSAKSSD 255
+P G++P K +KRGRPP + S K D
Sbjct: 112 KPIDEGSEPIIK--RKRGRPPKIKSSSPSTKLDD 143
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Frame = +1
Query: 115 DDGSTVVEKKGRGR-PKANGTQPESK---ELK-KRGR 210
D+GS + K+ RGR PK + P +K LK KRGR
Sbjct: 115 DEGSEPIIKRKRGRPPKIKSSSPSTKLDDPLKPKRGR 151
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 164 PMEHNLSRKNLKNEVGLQLPPE 229
P E N++ +N+KNE +P E
Sbjct: 45 PFESNINIRNIKNEESYDIPNE 66
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,230,542
Number of Sequences: 5004
Number of extensions: 40711
Number of successful extensions: 156
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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