Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_C15
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    28   1.0  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     27   2.3  
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    27   3.1  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   5.4  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    26   5.4  
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    25   7.2  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   9.5  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   9.5  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    25   9.5  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   9.5  

>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 358 DGPLKSLSIYLTSPCEEYPHFGMIESYNLTIAADSTLRSS 477
           DGP   + +  T+P  + PHF M  + + +I+A S  RS+
Sbjct: 41  DGPATFVRLKCTNPESKVPHFLMRMAKDSSISATSMFRSA 80


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 1   NIFVFNLIASSRAYKMFRLFLYLNILGAFLVTGL 102
           NI  FNL  S  ++    L  YLN+LG  L+T +
Sbjct: 57  NILYFNLSKSMVSFAQVPLEEYLNLLGHSLLTSI 90


>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 283 RDMLRIASPYVNRNAPQQVLDDDTYDGPL 369
           +D+  IAS Y ++  P  +  DD + GPL
Sbjct: 263 KDLQTIASLYDDQQLPSWITKDDLFRGPL 291


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 236  IVLFCRMPSNGVWRY*EICSE 298
            I  FCR+P +GV    EIC E
Sbjct: 1097 IFCFCRLPESGVMIECEICHE 1117


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 303 RDSEHISQYRQTPLDGIRQNRTIMFDYLNFKYITIKFVVR 184
           R  EHI    QT L+ +  N+    +  NF++I   F  R
Sbjct: 190 RICEHIENGSQTVLEILLMNQNSFLNNFNFEHIKADFAFR 229


>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 424 MIESYNLTIAADSTLRSSSIWGILR 498
           +IES NL  AAD T+  S I G +R
Sbjct: 174 VIESVNLIAAADGTVIQSEILGKVR 198


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 196 ICSKEFLSIAFAVLAKLHLSLLDIRVPVPR 107
           IC+   + +  + L  L LSLLD+ +P P+
Sbjct: 578 ICAFGLIGVLSSWLKSLFLSLLDLVIPNPK 607


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 223 VIEHDCPILSNAVQRSLAVLRDMLRIASPYVNRN 324
           ++  +   LSNA+  S+  L D+L+ +   VNRN
Sbjct: 349 IVHREVGDLSNALSVSMVRLVDILKFSVESVNRN 382


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 541 DYLRDETGASNFPSLSVFPI 482
           DY +D TGA +F  L V P+
Sbjct: 40  DYYKDSTGAYHFDKLIVTPL 59


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 273  QTPLDGIRQNRTIMFDYLNFKYITIKFVVRNFY 175
            +T   GI   +T  +++L     T+K +V N+Y
Sbjct: 1447 ETDPSGIVSRQTFFYNFLTIFLDTLKSIVTNYY 1479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,175
Number of Sequences: 5004
Number of extensions: 55526
Number of successful extensions: 166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)