Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_C13
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   1.2  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    26   2.2  
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    26   2.8  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   2.8  
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   3.8  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   5.0  
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    25   6.6  

>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 84  PVCRKKISVLPILIILTYRI-RMQRKGIARQAMEHRGRASSD 206
           P+C  KI+  PI+ IL  R+  MQ   IA QA+    R S D
Sbjct: 452 PLCMAKIAYSPIVRILCERMFDMQYIDIAEQALGVLERLSKD 493


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 178 WNTGVVRPPTLLRLRDC-LHRFYTVR 252
           W TGVV  PT+L+ R   LHR   +R
Sbjct: 169 WETGVVYHPTMLKERSYELHRVEVLR 194


>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -3

Query: 388 RSILIVFVKFKRSVIF*SVCLEHRKLSGEGAASFFVAALSDIFSRSVQCKIYE 230
           + +L V  KF R  I   + ++  +L+ EG   F+VA   + +     C +YE
Sbjct: 204 QDVLEVTTKFMRDPI--RILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYE 254


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 104 FSAANINNSNVPDTDATQRNCTTGNGTPGS 193
           F + N +N++ P T +  +  TTGN T  S
Sbjct: 54  FGSNNASNTSAPSTFSFGKAATTGNSTNAS 83


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 163 LHDRQWNTGVVRPPTLLRLRDCLHRFYTVRSAKICQTMRRQRS-LLPLHR 309
           L D    T +   P + R+   LH+ Y  +  ++   + RQ++ L P+H+
Sbjct: 28  LDDSVGFTDLFDAPNIYRVYSWLHKHYNQKKGQLKHGVSRQKNKLQPIHK 77


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 200 GRTTPVFHCLSCNSFALHPYPVR 132
           GR T V  C SCN     P P++
Sbjct: 529 GRLTSVVMCQSCNEITNTPEPIQ 551


>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 148 IRIRYVRIINIGSTEIFFRHTGLSA 74
           + +RY+++IN+G   + F   G  A
Sbjct: 170 LNLRYIKVINVGKKVVAFNIRGFLA 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,597,154
Number of Sequences: 5004
Number of extensions: 30519
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)