Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_C13
         (432 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   0.36 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   4.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   5.9  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   7.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.8  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 25.0 bits (52), Expect = 0.36
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 138 RIRMQR-KGIARQAMEHRGRASSDVIATTGLSS*ILHCTLRENMSDNAATKKLAAPS 305
           RI ++R K + +Q  ++RG   S    T GL + +   +++E   +   TK+  +PS
Sbjct: 495 RINIERMKQVYQQLNKYRGNGVSLKGETVGLLNALPPSSMKETEEEKKKTKQSLSPS 551


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 15  HGLRYGR*VKITPVVRIVRSADSPVC 92
           H L  G  ++ITP  + ++   SP+C
Sbjct: 187 HKLLIGPSIRITPAKKRIKLEQSPLC 212


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 161 NCTTGNGTPGSCVLR 205
           N TT NG+PGS  +R
Sbjct: 280 NSTTMNGSPGSGGIR 294


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +2

Query: 101 NFSAANINNSNVPDTDATQRNCTTGNGTP 187
           N S     N N  D  +++R    G+ TP
Sbjct: 634 NISTTIYENQNCLDASSSRRGSKIGSPTP 662


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 203 RRYCDYGTVFIDFTLYAPRK 262
           RR+  YG +F++ TL A ++
Sbjct: 187 RRFEKYGQLFMEETLKAAKR 206


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 10/35 (28%), Positives = 13/35 (37%)
 Frame = +2

Query: 254 PRKYVRQCGDKEACCPFTAQLPVLQANTSEDDASF 358
           P  YVR+    E+C P     P       E   +F
Sbjct: 423 PFVYVREIAFSESCLPEEILCPHFNVTDGETTKTF 457


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/20 (35%), Positives = 8/20 (40%)
 Frame = +2

Query: 137 PDTDATQRNCTTGNGTPGSC 196
           P T+     C T   TP  C
Sbjct: 346 PSTETLNTKCNTLERTPSKC 365


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 201 RTHDPGVPLPVVQFL 157
           R H  G PLP VQ+L
Sbjct: 422 RCHVAGEPLPRVQWL 436


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,221
Number of Sequences: 438
Number of extensions: 2328
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)