Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_C11
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   7.3  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    25   7.3  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    25   9.6  

>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +1

Query: 445 SAPESNRVLLRRRPVQPSA 501
           ++P+ N+VL+  RP+ PS+
Sbjct: 338 NSPKKNKVLVNMRPINPSS 356


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 385 RVSLR*RVGLDAMQKFTSATSAPESNRVLLRRRPVQPSAPS 507
           R  L   VGL+ +   T+   A  SNR  +   P+ PS  S
Sbjct: 675 RAVLNGLVGLETVHMLTNPDDAGSSNRFSMSVLPISPSLHS 715


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +2

Query: 17  RHAEDTRPNTLTCISARQLLRIPRNP 94
           +H +DT P+ ++ I+    L+IP++P
Sbjct: 325 KHLDDTIPSNVSDINHNDHLKIPQSP 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,137,452
Number of Sequences: 5004
Number of extensions: 38094
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)