Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P07_F_C11
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1469 + 27345430-27345534,27345690-27345763,27345852-273459... 30 1.4
06_01_0027 - 271199-271424,271628-272095,272721-273018,273133-27... 30 1.4
10_01_0083 - 1046086-1047086,1047976-1048161,1048266-1049247 29 2.5
12_02_1284 + 27548813-27549826 29 4.3
11_08_0048 - 28022335-28022520,28022607-28022699,28022804-280228... 28 7.5
08_02_0600 - 19166283-19166851,19166988-19168839,19169347-191694... 28 7.5
04_03_0368 + 15004949-15005659,15005789-15005848 28 7.5
02_05_1048 + 33748260-33748433,33748886-33748978,33750174-337503... 28 7.5
08_02_0110 + 12650328-12650552,12650827-12651423,12651480-126518... 27 9.9
08_01_0079 - 554936-554977,555108-555297,555384-555430,556039-55... 27 9.9
07_03_1735 + 29126170-29126227,29126368-29126711,29126790-291269... 27 9.9
04_01_0236 - 3069062-3069625,3070339-3070386 27 9.9
>08_02_1469 +
27345430-27345534,27345690-27345763,27345852-27345996,
27346359-27346460
Length = 141
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +2
Query: 329 VAVEEVLDESGSVVLDRTAGCLSADESGLMQCKSSQVPHQHPKVIECCYDDDLCNLR 499
+A E ++DE G + L A C+ D +G + ++S + K+ + DDD N R
Sbjct: 24 LATESLMDEQGLLQLQLHASCMVHDATGAI-LQASSISMIRNKIDQYTNDDDAGNAR 79
>06_01_0027 -
271199-271424,271628-272095,272721-273018,273133-273343,
273427-274124,274921-274969,276059-276112,276244-276275,
276319-276484,276563-276628,276717-276812,276868-276957,
277302-277398,277496-277575,277709-277753,278006-278134,
278593-278722,278888-279222,279918-280053,280149-280328,
280422-280679,280752-281137
Length = 1409
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +2
Query: 263 ARACPDGSSNGTCVTQVGGYCFVAVEEVLDESGSVVLDRTAGCLSADESG 412
+R C +G+ C+ ++ G C + E+L ES G ++ ++SG
Sbjct: 736 SRYCYEGADEEDCIIEMDGRCLYSSIELLIESAGCSSVAAVGVMAKEQSG 785
>10_01_0083 - 1046086-1047086,1047976-1048161,1048266-1049247
Length = 722
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 389 CLSADESGLMQCKSSQVPHQHPKVIECCYDDDLCNLRLH-PQLSEPSP 529
C++A S CK S +P + + C D D C LR+ P+L + P
Sbjct: 299 CVNATSSPGYICKCSDHYDGNPYIADGCQDIDECQLRIQFPELRDVYP 346
>12_02_1284 + 27548813-27549826
Length = 337
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 479 DDLCNLRLHPQLSEPSPD--VTESPGVRPPITSSPT 580
DD C+ R QL+ +PD V +P RP + + PT
Sbjct: 130 DDHCHARTLAQLAAAAPDLPVVTTPNARPVLAALPT 165
>11_08_0048 -
28022335-28022520,28022607-28022699,28022804-28022882,
28022951-28023061,28023133-28023390,28023468-28023970,
28024094-28024729,28024778-28025116
Length = 734
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 521 PSPDVTESPGVRPPITSSPT 580
P P V PG PP+ S PT
Sbjct: 298 PEPPVASPPGSEPPVASPPT 317
>08_02_0600 -
19166283-19166851,19166988-19168839,19169347-19169415,
19171797-19171844,19173500-19173622
Length = 886
Score = 27.9 bits (59), Expect = 7.5
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = +2
Query: 71 LLRIPRNPCVVTVQF*SWWCKNKVGDRRRRSELYLNDRAESGLGSLQNTDDMRLSRG 241
L+R PR P Q K+K G+R L +DRA +GLG+ + M +RG
Sbjct: 287 LVRDPRRPA----QTLGHLLKSKAGERVAVLLLVWDDRAATGLGAARRDGRMGAARG 339
>04_03_0368 + 15004949-15005659,15005789-15005848
Length = 256
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 433 TSATSAPESNRVLLRRRPV 489
TS TS+P + R LLRRRP+
Sbjct: 211 TSTTSSPTAGRRLLRRRPM 229
>02_05_1048 +
33748260-33748433,33748886-33748978,33750174-33750371,
33750502-33750675,33750769-33750875,33751233-33751564,
33751654-33752147
Length = 523
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +2
Query: 365 VVLDRTAGCLSADESGLMQCKSSQVPHQHPKVIECCYDDDLCNLRLHPQL 514
V D T G S ++QC+SS + K+I+C D L L L P +
Sbjct: 236 VASDFTGGQASIKRRHILQCQSSLLSKNFEKLIQC--DQRLNYLSLQPYM 283
>08_02_0110 +
12650328-12650552,12650827-12651423,12651480-12651857,
12651997-12652218,12652407-12652483,12652553-12652631,
12652920-12653105
Length = 587
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 515 SEPSPDVTESPGVRPPITSSP 577
S P P V PG PP+ S P
Sbjct: 230 SRPEPPVASPPGPEPPVASPP 250
>08_01_0079 -
554936-554977,555108-555297,555384-555430,556039-556139,
556223-556271,556432-556494,556602-556695,556822-556924,
557719-557791,557872-557984,558068-558149,558386-558913,
559015-559098,560156-560305,561021-561191,561759-561809,
562601-562738,562823-562894,563236-563391,563681-563839,
564080-564180,564577-564829
Length = 939
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -1
Query: 560 GAAPPGTPSRPVTVQIAEDGAEGCTGRRRNSTRLLSGAD 444
GA+P + P + ED E C RR+ R S +D
Sbjct: 30 GASPDSLRNTPSNIARLEDAIEHCAARRKYLARTKSPSD 68
>07_03_1735 +
29126170-29126227,29126368-29126711,29126790-29126928,
29127028-29127668
Length = 393
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 443 HQHPKVIECCYDDDLCNLRLHPQLSEPSPDVTESPGVR 556
H PK+ DD L LRL Q ++PS T +P R
Sbjct: 347 HHDPKLRPAMPDDVLPQLRLLQQNTKPSSSSTSAPAHR 384
>04_01_0236 - 3069062-3069625,3070339-3070386
Length = 203
Score = 27.5 bits (58), Expect = 9.9
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Frame = +2
Query: 254 CAGARACPDGSSNG-----TCVTQVGGY-CFVAVEE---VLDESGSVVLDRTAGCLSADE 406
C G R C G S G T + Q G C +++ +L GS R+ GC S+
Sbjct: 24 CGGRRRCRGGGSPGRVTISTYLMQEGAVSCTYLIQDFRLLLTGLGSS-RSRSTGCWSSTS 82
Query: 407 SGLMQCKSSQVPHQHPKVIECCYDDDL 487
S MQ S ++ V EC DDL
Sbjct: 83 SNSMQDPSPEIHPADGGVAEC---DDL 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,086,034
Number of Sequences: 37544
Number of extensions: 329150
Number of successful extensions: 1225
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -