Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P07_F_C05
(470 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VD81 Cluster: DNA-directed RNA polymerase subunit; n=... 144 9e-34
UniRef50_Q9P1U0 Cluster: DNA-directed RNA polymerase I subunit R... 99 2e-20
UniRef50_O17587 Cluster: Putative uncharacterized protein; n=2; ... 83 2e-15
UniRef50_P32529 Cluster: DNA-directed RNA polymerase I subunit R... 80 2e-14
UniRef50_Q4T1I2 Cluster: Chromosome undetermined SCAF10575, whol... 80 3e-14
UniRef50_UPI000049984E Cluster: DNA-directed RNA polymerase I su... 75 6e-13
UniRef50_O94703 Cluster: DNA-directed RNA polymerase I subunit R... 75 1e-12
UniRef50_Q54YF5 Cluster: RNA polymerase I subunit; n=1; Dictyost... 73 2e-12
UniRef50_Q5DGH5 Cluster: SJCHGC08580 protein; n=1; Schistosoma j... 72 6e-12
UniRef50_A2EHZ7 Cluster: Putative uncharacterized protein; n=1; ... 72 6e-12
UniRef50_A0E7M3 Cluster: Chromosome undetermined scaffold_81, wh... 71 1e-11
UniRef50_UPI00006600EC Cluster: DNA-directed RNA polymerase I su... 68 1e-10
UniRef50_Q8SRA1 Cluster: DNA-DIRECTED RNA POLYMERASE I SUBUNIT M... 67 2e-10
UniRef50_Q4P4T4 Cluster: Putative uncharacterized protein; n=1; ... 66 5e-10
UniRef50_Q22CT1 Cluster: Transcription factor S-II; n=1; Tetrahy... 64 1e-09
UniRef50_Q9LU97 Cluster: Similarity to transcription-associated ... 63 3e-09
UniRef50_Q7QY69 Cluster: GLP_572_32225_32536; n=1; Giardia lambl... 63 3e-09
UniRef50_Q2UH76 Cluster: Predicted protein; n=1; Aspergillus ory... 61 1e-08
UniRef50_Q01C33 Cluster: RNA polymerase III subunit C11; n=2; Os... 59 6e-08
UniRef50_Q5KKH5 Cluster: DNA-directed RNA polymerase subunit; n=... 59 6e-08
UniRef50_O96159 Cluster: Transcription factor, putative; n=5; Pl... 58 1e-07
UniRef50_Q0DP65 Cluster: Os03g0711700 protein; n=4; Oryza sativa... 57 2e-07
UniRef50_Q9LNK0 Cluster: DNA-directed RNA polymerase subunit; n=... 56 3e-07
UniRef50_Q58548 Cluster: DNA-directed RNA polymerase subunit M; ... 56 5e-07
UniRef50_A1CED1 Cluster: DNA-directed RNA polymerase subunit; n=... 55 7e-07
UniRef50_Q9YEZ3 Cluster: Archaeal transcription factor S; n=2; T... 54 1e-06
UniRef50_Q5V5C5 Cluster: DNA-directed RNA-polymerase subunit M; ... 54 2e-06
UniRef50_A7DQB3 Cluster: Transcription termination factor Tfs; n... 54 2e-06
UniRef50_A1RXU9 Cluster: Transcription termination factor Tfs; n... 54 2e-06
UniRef50_O27369 Cluster: DNA-directed RNA polymerase subunit M; ... 54 2e-06
UniRef50_Q4N7G2 Cluster: Putative uncharacterized protein; n=2; ... 54 2e-06
UniRef50_Q2NEY4 Cluster: RpoM2; n=2; Methanobacteriaceae|Rep: Rp... 54 2e-06
UniRef50_Q9LNT2 Cluster: T20H2.16 protein; n=1; Arabidopsis thal... 53 3e-06
UniRef50_Q07271 Cluster: DNA-directed RNA polymerase subunit M; ... 53 4e-06
UniRef50_Q7RCT6 Cluster: Putative transcription factor; n=2; Pla... 52 5e-06
UniRef50_A7ARU9 Cluster: Putative uncharacterized protein; n=1; ... 52 5e-06
UniRef50_O13896 Cluster: DNA-directed RNA polymerase III subunit... 52 6e-06
UniRef50_A5KAM3 Cluster: Putative uncharacterized protein; n=4; ... 52 8e-06
UniRef50_Q5CYY8 Cluster: RNA polymerase III subunit C11; n=1; Cr... 51 1e-05
UniRef50_Q74N12 Cluster: NEQ377; n=1; Nanoarchaeum equitans|Rep:... 50 3e-05
UniRef50_A4R9N1 Cluster: Predicted protein; n=1; Magnaporthe gri... 50 3e-05
UniRef50_Q2FPF9 Cluster: Transcription factor S; n=3; Euryarchae... 50 3e-05
UniRef50_A4R9M8 Cluster: Putative uncharacterized protein; n=1; ... 49 5e-05
UniRef50_UPI00004998C5 Cluster: RNA polymerase III subunit; n=1;... 49 6e-05
UniRef50_Q8PX24 Cluster: DNA-directed RNA polymerase subunit M; ... 49 6e-05
UniRef50_Q4CXN7 Cluster: Transcription elongation factor S-II, p... 48 1e-04
UniRef50_A2EBM6 Cluster: Putative uncharacterized protein; n=1; ... 48 1e-04
UniRef50_Q5CUJ8 Cluster: Putative uncharacterized protein; n=1; ... 47 2e-04
UniRef50_Q15ES4 Cluster: RNA polymerase III subunit C11-like pro... 47 2e-04
UniRef50_Q8ZTX9 Cluster: DNA-directed RNA polymerase subunit M; ... 47 2e-04
UniRef50_Q9P9I8 Cluster: Archaeal transcription factor S; n=2; M... 47 2e-04
UniRef50_Q8SSB3 Cluster: DNA-DIRECTED RNA POLYMERASE III 12.5kDa... 46 3e-04
UniRef50_Q0D7N2 Cluster: Os07g0229700 protein; n=4; Magnoliophyt... 46 6e-04
UniRef50_A7Q3Y6 Cluster: Chromosome chr13 scaffold_48, whole gen... 46 6e-04
UniRef50_Q4A328 Cluster: Transcription factor S-II (TFIIS) famil... 45 7e-04
UniRef50_Q97AQ6 Cluster: Transcription factor [TFIIS/RPB9]; n=5;... 45 7e-04
UniRef50_A7D318 Cluster: Transcription factor TFIIS; n=1; Haloru... 45 0.001
UniRef50_Q4DC35 Cluster: DNA-directed RNA polymerase subunit; n=... 44 0.002
UniRef50_A0RXH6 Cluster: DNA-directed RNA polymerase, subunit M/... 44 0.002
UniRef50_Q2H0C1 Cluster: DNA-directed RNA polymerase subunit; n=... 44 0.002
UniRef50_A7TNI5 Cluster: Putative uncharacterized protein; n=1; ... 44 0.002
UniRef50_A3LW94 Cluster: DNA-directed RNA polymerase subunit; n=... 44 0.002
UniRef50_Q2U4B9 Cluster: Transcription elongation factor TFIIS/C... 43 0.003
UniRef50_A4S3C9 Cluster: Predicted protein; n=2; Ostreococcus|Re... 43 0.004
UniRef50_Q4DDP9 Cluster: DNA-directed RNA polymerase, putative; ... 43 0.004
UniRef50_Q2P9W0 Cluster: RNA polymerase I subunit RPA12; n=2; Tr... 43 0.004
UniRef50_Q9ZVH8 Cluster: Putative elongation factor; n=5; Magnol... 42 0.005
UniRef50_A4RUS3 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 42 0.005
UniRef50_Q5V537 Cluster: DNA-directed RNA-polymerase subunit M; ... 42 0.007
UniRef50_A3DM83 Cluster: Transcription factor S; n=1; Staphyloth... 42 0.007
UniRef50_P07273 Cluster: Transcription elongation factor S-II; n... 42 0.007
UniRef50_P49373 Cluster: Transcription elongation factor S-II; n... 42 0.007
UniRef50_Q586X9 Cluster: Transcription elongation factor S-II, p... 42 0.009
UniRef50_Q4Q100 Cluster: Transcription factor S-II-like protein;... 42 0.009
UniRef50_Q5KEF1 Cluster: RNA polymerase III smallest subunit, pu... 42 0.009
UniRef50_P52652 Cluster: Putative transcription elongation facto... 42 0.009
UniRef50_Q387Z6 Cluster: RNA polymerase III C11 subunit, putativ... 41 0.012
UniRef50_A0B7Y7 Cluster: Transcription factor TFIIS; n=1; Methan... 41 0.012
UniRef50_Q4N8B9 Cluster: Transcription elongation factor SII, pu... 41 0.016
UniRef50_Q8SS71 Cluster: TRANSCRIPTION ELONGATION FACTOR SII; n=... 41 0.016
UniRef50_A7F3K8 Cluster: Predicted protein; n=1; Sclerotinia scl... 41 0.016
UniRef50_A6QWZ4 Cluster: Predicted protein; n=1; Ajellomyces cap... 40 0.021
UniRef50_Q04307 Cluster: DNA-directed RNA polymerase III subunit... 40 0.021
UniRef50_UPI0000E47C8A Cluster: PREDICTED: similar to ENSANGP000... 40 0.028
UniRef50_A6RN27 Cluster: Transcription elongation factor S-II; n... 40 0.028
UniRef50_Q7QQW3 Cluster: DNA-directed RNA polymerase subunit; n=... 40 0.036
UniRef50_A5JZL5 Cluster: Transcription elongation factor, putati... 40 0.036
UniRef50_A3LRC5 Cluster: Predicted protein; n=5; Saccharomycetal... 40 0.036
UniRef50_UPI0000499ED2 Cluster: hypothetical protein 230.t00020;... 39 0.048
UniRef50_A0CQT2 Cluster: Chromosome undetermined scaffold_24, wh... 39 0.048
UniRef50_Q4P1X5 Cluster: Putative uncharacterized protein; n=1; ... 39 0.048
UniRef50_Q4UH96 Cluster: Transcription elongation factor, putati... 39 0.064
UniRef50_Q5YFI0 Cluster: Transcription elongation factor TFIIS; ... 38 0.084
UniRef50_Q4Q3Q4 Cluster: Transcription elongation factor-like pr... 38 0.084
UniRef50_Q6C6I8 Cluster: Similar to DEHA0C15686g Debaryomyces ha... 38 0.084
UniRef50_Q9YPH8 Cluster: Transcription elongation factor SII; n=... 38 0.11
UniRef50_A7AWE5 Cluster: Transcription factor S-II (TFIIS)and tr... 38 0.11
UniRef50_Q0UVI1 Cluster: Predicted protein; n=1; Phaeosphaeria n... 38 0.11
UniRef50_Q9N4B7 Cluster: DNA-directed RNA polymerase subunit; n=... 38 0.15
UniRef50_Q5CVE1 Cluster: Transcription elongation factor TFIIS; ... 38 0.15
UniRef50_A7ASV0 Cluster: Transcription factor S-II protein, puta... 38 0.15
UniRef50_Q197A5 Cluster: Putative uncharacterized protein; n=1; ... 37 0.19
UniRef50_Q0W2J5 Cluster: Archaeal transcription factor S; n=4; E... 37 0.19
UniRef50_A0DS61 Cluster: Chromosome undetermined scaffold_61, wh... 37 0.26
UniRef50_Q677Z7 Cluster: DNA-directed RNA polymerase subunit M; ... 36 0.34
UniRef50_Q1JT63 Cluster: Transcription elongation factor s-II, p... 36 0.34
UniRef50_Q9Y2Y1 Cluster: DNA-directed RNA polymerase III subunit... 36 0.34
UniRef50_Q9DGD2 Cluster: Transcription elongation factor XSII-K1... 36 0.45
UniRef50_Q5UQS8 Cluster: TFII-like transcription factor; n=1; Ac... 36 0.59
UniRef50_P27948 Cluster: Transcription factor S-II-related prote... 36 0.59
UniRef50_Q8SQU1 Cluster: DNA-directed RNA polymerase II subunit ... 36 0.59
UniRef50_P36958 Cluster: DNA-directed RNA polymerase II subunit ... 36 0.59
UniRef50_UPI000155606C Cluster: PREDICTED: similar to ZNRD1, par... 35 0.78
UniRef50_Q91FH5 Cluster: 349L; n=1; Invertebrate iridescent viru... 35 0.78
UniRef50_Q6EU09 Cluster: DNA-directed RNA polymerase subunit; n=... 35 0.78
UniRef50_Q4X1W6 Cluster: DNA-directed RNA polymerase subunit; n=... 35 0.78
UniRef50_A2RAZ1 Cluster: Complex: hRPC11 is a small; n=5; Euroti... 35 0.78
UniRef50_P23193 Cluster: Transcription elongation factor A prote... 35 0.78
UniRef50_Q6GZP4 Cluster: Transcription elongation factor SII; n=... 35 1.0
UniRef50_Q7QXB3 Cluster: GLP_741_50228_49188; n=1; Giardia lambl... 35 1.0
UniRef50_Q4QAW0 Cluster: Transcription elongation factor, putati... 35 1.0
UniRef50_O75764 Cluster: Transcription elongation factor A prote... 35 1.0
UniRef50_UPI00006CB60F Cluster: hypothetical protein TTHERM_0044... 34 1.4
UniRef50_Q6P0U5 Cluster: Zgc:77732; n=4; Clupeocephala|Rep: Zgc:... 34 1.4
UniRef50_Q4TIF2 Cluster: Chromosome undetermined SCAF2195, whole... 34 1.4
UniRef50_Q919I9 Cluster: CUN088 putative lef-5 late expression f... 34 1.8
UniRef50_Q54YG9 Cluster: RNA polymerase II elongation factor; n=... 34 1.8
UniRef50_Q4QDH9 Cluster: RNA polymerase III C11 subunit, putativ... 34 1.8
UniRef50_Q15560 Cluster: Transcription elongation factor A prote... 34 1.8
UniRef50_Q9GZ09 Cluster: Transcription elongation factor TFIIS; ... 33 2.4
UniRef50_Q5CPB7 Cluster: DNA-directed RNA polymerase 2 subunit; ... 33 2.4
UniRef50_UPI0000161EFD Cluster: Transcription factor SII homolog... 33 3.2
UniRef50_Q5DAX2 Cluster: SJCHGC05867 protein; n=1; Schistosoma j... 33 3.2
UniRef50_P27999 Cluster: DNA-directed RNA polymerase II subunit ... 33 3.2
UniRef50_A0EDT1 Cluster: Chromosome undetermined scaffold_90, wh... 33 4.2
UniRef50_Q16L70 Cluster: Putative uncharacterized protein; n=1; ... 32 5.5
UniRef50_Q98TK0 Cluster: RNA polymerase III smallest subunit; n=... 32 7.3
UniRef50_O67640 Cluster: Putative uncharacterized protein; n=1; ... 32 7.3
UniRef50_Q4KSC5 Cluster: Transcription elongation factor SII; n=... 31 9.7
UniRef50_A6P9S0 Cluster: Primosomal protein N'; n=6; Shewanella|... 31 9.7
UniRef50_A4V735 Cluster: Putative uncharacterized protein; n=1; ... 31 9.7
UniRef50_A1W8N7 Cluster: Putative uncharacterized protein; n=1; ... 31 9.7
UniRef50_Q4DRW2 Cluster: Transcription elongation factor, putati... 31 9.7
UniRef50_A7AQR2 Cluster: Glycerol-3-phosphate-acyltransferase, p... 31 9.7
UniRef50_A6RCK2 Cluster: Predicted protein; n=1; Ajellomyces cap... 31 9.7
>UniRef50_Q9VD81 Cluster: DNA-directed RNA polymerase subunit; n=8;
Endopterygota|Rep: DNA-directed RNA polymerase subunit -
Drosophila melanogaster (Fruit fly)
Length = 120
Score = 144 bits (349), Expect = 9e-34
Identities = 68/116 (58%), Positives = 83/116 (71%), Gaps = 3/116 (2%)
Frame = +1
Query: 109 STSTAFCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTI--SVITNEN 282
S FC CGSILP LQ G+V CY CK ++ D YS K ++TIHFNT S + N
Sbjct: 5 SNCPGFCPSCGSILPELQVKGNVICYNCKKEFQPDVYSGEKSEFTIHFNTYDPSKVFNRT 64
Query: 283 ILHTDGP-EGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 447
++ +GPVVERKC KC +D+MSYATLQLRSADEGQTVF+TC+KCK+KE+ENS
Sbjct: 65 KRESESDADGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCLKCKFKESENS 120
>UniRef50_Q9P1U0 Cluster: DNA-directed RNA polymerase I subunit
RPA12; n=22; Eumetazoa|Rep: DNA-directed RNA polymerase
I subunit RPA12 - Homo sapiens (Human)
Length = 126
Score = 99 bits (238), Expect = 2e-20
Identities = 47/124 (37%), Positives = 75/124 (60%), Gaps = 2/124 (1%)
Frame = +1
Query: 82 EIMSTESPLSTSTAFCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTI 261
++ +T S + FC+ CGS+LPL +V C C + ++ + ++ F+ +
Sbjct: 5 DLANTCSSFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQL 64
Query: 262 SVITNENILHTDGPE--GPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKE 435
++ +GPE GPVV+R+C +CG++ M+Y T Q+RSADEGQTVFYTC CK++E
Sbjct: 65 GTAMPMSV--EEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQE 122
Query: 436 TENS 447
E+S
Sbjct: 123 KEDS 126
>UniRef50_O17587 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 119
Score = 83.4 bits (197), Expect = 2e-15
Identities = 48/120 (40%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Frame = +1
Query: 106 LSTSTAFCARCGSILPL-LQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNEN 282
LS FC CG+IL L Q +V C C + K + + + + I
Sbjct: 6 LSYDDDFCGYCGAILELPAQAPATVSCKVCSTRWAV----KERVDQVV--SRVEKIYERT 59
Query: 283 ILHTDGPEGP-----VVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 447
+ TDG E VV+ C KCG+ + SY+T+Q RSADEGQTVFYTC+KCK K+ E S
Sbjct: 60 VADTDGIENDESADAVVDHICTKCGHSKASYSTMQTRSADEGQTVFYTCLKCKKKDIEYS 119
>UniRef50_P32529 Cluster: DNA-directed RNA polymerase I subunit
RPA12; n=12; Saccharomycetales|Rep: DNA-directed RNA
polymerase I subunit RPA12 - Saccharomyces cerevisiae
(Baker's yeast)
Length = 125
Score = 80.2 bits (189), Expect = 2e-14
Identities = 45/120 (37%), Positives = 64/120 (53%), Gaps = 9/120 (7%)
Frame = +1
Query: 115 STAFCARCGSIL--PLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTI--SVITNEN 282
S FC CG +L P +V+C CKA Y +S +K T + S+ ++
Sbjct: 6 SLIFCLDCGDLLENPNAVLGSNVECSQCKAIYPKSQFSNLKVVTTTADDAFPSSLRAKKS 65
Query: 283 ILHT-----DGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 447
++ T + +G ++ KC +CG + M+Y TLQLRSADEG TVFYTC C YK N+
Sbjct: 66 VVKTSLKKNELKDGATIKEKCPQCGNEEMNYHTLQLRSADEGATVFYTCTSCGYKFRTNN 125
>UniRef50_Q4T1I2 Cluster: Chromosome undetermined SCAF10575, whole
genome shotgun sequence; n=2; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF10575,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 147
Score = 79.8 bits (188), Expect = 3e-14
Identities = 38/120 (31%), Positives = 61/120 (50%)
Frame = +1
Query: 85 IMSTESPLSTSTAFCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTIS 264
I++ S ++ FC CG+ILP +V+C C + + + T+ N
Sbjct: 9 IVADMSSFTSDLNFCPECGNILPPPGLQDTVRCPRCSFSIPVAEFDGQQIRSTVVLNPAE 68
Query: 265 VITNENILHTDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETEN 444
+GPV++R+C +C + M Y T Q+RSADEGQTVF+TC+ C+ + E+
Sbjct: 69 KSAAVVEEEDSDLQGPVIDRRCVRCNKEGMVYHTRQMRSADEGQTVFFTCVHCRRRTLES 128
>UniRef50_UPI000049984E Cluster: DNA-directed RNA polymerase I
subunit; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
DNA-directed RNA polymerase I subunit - Entamoeba
histolytica HM-1:IMSS
Length = 122
Score = 75.4 bits (177), Expect = 6e-13
Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Frame = +1
Query: 118 TAFCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHTD 297
++FC RCG+ L +L + G + C C AD +F+Y T S+ N D
Sbjct: 13 SSFCPRCGTYL-ILSDSGDIVCDVCHFVISAD-----QFKYNPIETTSSIFEMSNKKRID 66
Query: 298 G------PEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 447
P G +V KC CG + M Y + Q+RS DEGQTV+Y C C ++ET N+
Sbjct: 67 SKIKEILPTGAIVYEKCPNCGNETMHYHSAQVRSVDEGQTVYYECPNCGHQETVNT 122
>UniRef50_O94703 Cluster: DNA-directed RNA polymerase I subunit
RPA12; n=1; Schizosaccharomyces pombe|Rep: DNA-directed
RNA polymerase I subunit RPA12 - Schizosaccharomyces
pombe (Fission yeast)
Length = 119
Score = 74.5 bits (175), Expect = 1e-12
Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 4/115 (3%)
Frame = +1
Query: 115 STAFCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTI--SVITNENIL 288
S FC+ CG++L + C C++ Y ++ ++ + + + ++ +I+
Sbjct: 6 SLIFCSECGNLLESTTAQWTT-CDQCQSVYPSEQFANLVVETKSSASAFPSALKLKHSIV 64
Query: 289 HTDGP--EGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 447
+ E +E KC KCG D M++ TLQLRSADEG TVFY C +C YK + N+
Sbjct: 65 QVESQKEEAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYECPRCAYKFSTNN 119
>UniRef50_Q54YF5 Cluster: RNA polymerase I subunit; n=1;
Dictyostelium discoideum AX4|Rep: RNA polymerase I
subunit - Dictyostelium discoideum AX4
Length = 324
Score = 73.3 bits (172), Expect = 2e-12
Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Frame = +1
Query: 124 FCARCGSILPLLQEFGS-VKCYTCK-AHYEADNYSKMKFQYTIHFNTISVITNENILHTD 297
FC +C + L + F + C C + +AD +K + FN S+ E D
Sbjct: 218 FCPQCNAFLNYPKNFSQHITCSLCTFSKSKADLLNKKIVTKSSLFNK-SIKNKEEDNEED 276
Query: 298 GPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 447
G +++ KC +CG+ +M + T Q RSADEGQT+FY C+KC +K + NS
Sbjct: 277 --RGAIIDEKCPECGHGKMYFKTAQTRSADEGQTIFYDCVKCSFKFSTNS 324
>UniRef50_Q5DGH5 Cluster: SJCHGC08580 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC08580 protein - Schistosoma
japonicum (Blood fluke)
Length = 116
Score = 72.1 bits (169), Expect = 6e-12
Identities = 30/48 (62%), Positives = 36/48 (75%)
Frame = +1
Query: 304 EGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 447
+GP + ++CA CG DRM Y TLQ RSADEGQTV YTC +C KE EN+
Sbjct: 69 DGPSIRKECAYCGNDRMVYVTLQTRSADEGQTVIYTCTQCAKKEIENT 116
>UniRef50_A2EHZ7 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 126
Score = 72.1 bits (169), Expect = 6e-12
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Frame = +1
Query: 124 FCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTISVITN-ENILHTDG 300
FC CG+++P+ G + C CK ++ ++F T+ ++ + I G
Sbjct: 26 FCTFCGTLVPI-SNVGHMVCPLCKKAFDG---KALQFSE----KTVKIVKEADEITSKQG 77
Query: 301 PEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 447
+++ KC +CG + + + T Q+RSADEGQT+FY CI C Y+ ++N+
Sbjct: 78 LARSIIKEKCPECGEEGLYFTTAQIRSADEGQTIFYECIHCGYRFSQNA 126
>UniRef50_A0E7M3 Cluster: Chromosome undetermined scaffold_81, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_81,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 118
Score = 71.3 bits (167), Expect = 1e-11
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Frame = +1
Query: 106 LSTSTAFCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNE-- 279
L ++ FC +C +L L + ++C C +Y TI S ++N+
Sbjct: 3 LDSAADFCPQCHFMLELPEVMDIIECNRCGYKCSITDYQPKYIISTIKMEPKSWLSNQPQ 62
Query: 280 NILHTDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 447
+D V+E+ C KC ++ ++T QLRSADEG TVFY C+KC+++ N+
Sbjct: 63 ESKLSDQSHRAVIEQVCPKCSHEEAYFSTAQLRSADEGSTVFYECVKCQFRYQLNN 118
>UniRef50_UPI00006600EC Cluster: DNA-directed RNA polymerase I
subunit 12 (EC 2.7.7.6) (Nuclear RNA polymerase I
small-specific subunit Rpa12) (Zinc ribbon domain-
containing protein 1).; n=1; Takifugu rubripes|Rep:
DNA-directed RNA polymerase I subunit 12 (EC 2.7.7.6)
(Nuclear RNA polymerase I small-specific subunit Rpa12)
(Zinc ribbon domain- containing protein 1). - Takifugu
rubripes
Length = 140
Score = 67.7 bits (158), Expect = 1e-10
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 23/131 (17%)
Frame = +1
Query: 124 FCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTIS----VITNENILH 291
FC CG+ILPL +V+C C ++ + + T+ N I ++ +++
Sbjct: 10 FCPECGNILPLPGLQDTVRCPRCSFSIPVAEFNGQQIRSTVVLNPIERSAVILEDKDDSE 69
Query: 292 TDGP----EGPV---------------VERKCAKCGYDRMSYATLQLRSADEGQTVFYTC 414
GP G + ++R+C +C + M Y T Q+RSADEGQTVF+TC
Sbjct: 70 LKGPVVRQHGGLSVGRGDDSANCDFLQIDRRCLRCNKEGMVYHTRQMRSADEGQTVFFTC 129
Query: 415 IKCKYKETENS 447
I C+++E E+S
Sbjct: 130 IHCRFQEKEDS 140
>UniRef50_Q8SRA1 Cluster: DNA-DIRECTED RNA POLYMERASE I SUBUNIT M;
n=1; Encephalitozoon cuniculi|Rep: DNA-DIRECTED RNA
POLYMERASE I SUBUNIT M - Encephalitozoon cuniculi
Length = 99
Score = 67.3 bits (157), Expect = 2e-10
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Frame = +1
Query: 124 FCARCGSILPLLQEFGSVKCYTCKAHYEA----DNYSKMKFQYTIHFNTISVITNENILH 291
FC CG+++ + + V+C CK Y+++K Q +H + V
Sbjct: 2 FCI-CGTLVYVRSDSSRVECPRCKRENSVAMIKPTYTEVKVQRDLHIEAVDV-------- 52
Query: 292 TDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 447
+G ++ +C CG + M Y T QLRS DEGQTVFY+C KC Y++T S
Sbjct: 53 ----QGAKIKHRCPACGAEEMMYNTAQLRSTDEGQTVFYSC-KCGYRQTVQS 99
>UniRef50_Q4P4T4 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 147
Score = 65.7 bits (153), Expect = 5e-10
Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 27/138 (19%)
Frame = +1
Query: 115 STAFCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIH-------FNTISVIT 273
S FC CGS+L + + +KC C A A + + I ++ +S++T
Sbjct: 10 SLLFCPNCGSLLDVPGDEDMIKCAPCGAVQNAKGSADLLSTLLISSRSNNQVYDNLSIVT 69
Query: 274 NEN-------------ILHTDG-------PEGPVVERKCAKCGYDRMSYATLQLRSADEG 393
+ +++T P+ ++ KC CG D M++ TLQLRSADEG
Sbjct: 70 RSHPSAFPSALRQKRQLVNTAAALGDDKKPQEATIKEKCPGCGNDEMNFHTLQLRSADEG 129
Query: 394 QTVFYTCIKCKYKETENS 447
TVFY C KC YK ++N+
Sbjct: 130 TTVFYDCPKCGYKFSQNN 147
>UniRef50_Q22CT1 Cluster: Transcription factor S-II; n=1;
Tetrahymena thermophila SB210|Rep: Transcription factor
S-II - Tetrahymena thermophila SB210
Length = 136
Score = 64.5 bits (150), Expect = 1e-09
Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 15/129 (11%)
Frame = +1
Query: 106 LSTSTAFCARCGSILPLLQEFGSVKCYTCK-----AHYE-ADNYSKMKF--------QYT 243
L+T++ FC +CG+++ + V+C C+ Y+ A S+++F QY
Sbjct: 8 LNTASEFCPQCGNMIEMPLYSDKVECSKCEFLCSVLEYKCAPIVSRIEFNQKKQWLEQYR 67
Query: 244 IHFNT-ISVITNENILHTDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIK 420
N I I E++ + ++++C CG+D + + T+Q RSADEG TVFY C
Sbjct: 68 ASQNKKIHGIEEEDLEDKHKHKKATLKQECPDCGHDTLYFWTVQTRSADEGSTVFYECQD 127
Query: 421 CKYKETENS 447
CK+K T N+
Sbjct: 128 CKFKFTANN 136
>UniRef50_Q9LU97 Cluster: Similarity to transcription-associated
zinc ribbon protein; n=2; Arabidopsis thaliana|Rep:
Similarity to transcription-associated zinc ribbon
protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 119
Score = 63.3 bits (147), Expect = 3e-09
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Frame = +1
Query: 124 FCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENIL--HTD 297
FC CG++L +L+ +C CK A + + YT+ I ++ T
Sbjct: 11 FCNLCGTML-VLKSTKYAECPHCKTTRNAKDIIDKEIAYTVSAEDIRRELGISLFGEKTQ 69
Query: 298 GP-EGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETE 441
E P +++ C KC + + Y T Q RSADEGQT +YTC C ++ TE
Sbjct: 70 AEAELPKIKKACEKCQHPELVYTTRQTRSADEGQTTYYTCPNCAHRFTE 118
>UniRef50_Q7QY69 Cluster: GLP_572_32225_32536; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_572_32225_32536 - Giardia lamblia
ATCC 50803
Length = 103
Score = 62.9 bits (146), Expect = 3e-09
Identities = 33/109 (30%), Positives = 53/109 (48%)
Frame = +1
Query: 121 AFCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHTDG 300
+FC C +IL + + C C+ YE + +H T + E +
Sbjct: 3 SFCQECATILETMGPYDY--CALCQKKYERARQGDVVTS-EVHLQT-HYVAQERMTENR- 57
Query: 301 PEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 447
PV++ C KC + + YA++Q+RSADEGQT+F+ C C +K N+
Sbjct: 58 ---PVIDETCPKCHHGQAYYASMQMRSADEGQTIFFECCSCGHKYRTNT 103
>UniRef50_Q2UH76 Cluster: Predicted protein; n=1; Aspergillus
oryzae|Rep: Predicted protein - Aspergillus oryzae
Length = 122
Score = 60.9 bits (141), Expect = 1e-08
Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 7/110 (6%)
Frame = +1
Query: 124 FCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHTD-- 297
+C CGS+L E +++C C A N Q T+ N S + N+ T+
Sbjct: 17 YCDICGSLLDESPE-ETLQCELCGKL--AKNTVFFHTQTTVSENFPSKLRNKMKSFTEKA 73
Query: 298 -----GPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 432
GP GP +E C KC ++Y+ +QLRSADEG T+FY C+KC ++
Sbjct: 74 TRDELGP-GPTIEVDCVKCPSKDVTYSQVQLRSADEGSTIFYNCLKCGHR 122
>UniRef50_Q01C33 Cluster: RNA polymerase III subunit C11; n=2;
Ostreococcus|Rep: RNA polymerase III subunit C11 -
Ostreococcus tauri
Length = 136
Score = 58.8 bits (136), Expect = 6e-08
Identities = 24/48 (50%), Positives = 34/48 (70%)
Frame = +1
Query: 304 EGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 447
E V+ KC KC + +++ T+QLRSADEGQTVFY C KC + ++N+
Sbjct: 89 ERATVDEKCPKCKHKGLNFYTMQLRSADEGQTVFYECPKCNHTFSQNN 136
>UniRef50_Q5KKH5 Cluster: DNA-directed RNA polymerase subunit; n=1;
Filobasidiella neoformans|Rep: DNA-directed RNA
polymerase subunit - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 132
Score = 58.8 bits (136), Expect = 6e-08
Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Frame = +1
Query: 115 STAFCARCGSILPLLQEF-GSVKCYTCKAHYEADNYSKMKFQYTIHFNTI-SVITNENIL 288
S FC CG++L L ++ + C C A +Y + + N S + ++ L
Sbjct: 13 SLLFCPACGTLLDLPKDDQNEIACSQCGRLEPASSYENLPTKTYSSPNAFPSSLRSKRAL 72
Query: 289 ---HTDGPEGPV----VERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 447
D E + KC KCG+ +SY +QLRSADEG T+FY C+ C + + N+
Sbjct: 73 VQNKLDAGEAAKGRDPAQEKCQKCGHIGLSYKEMQLRSADEGSTIFYKCLNCGDQTSTNN 132
>UniRef50_O96159 Cluster: Transcription factor, putative; n=5;
Plasmodium|Rep: Transcription factor, putative -
Plasmodium falciparum (isolate 3D7)
Length = 106
Score = 58.0 bits (134), Expect = 1e-07
Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Frame = +1
Query: 124 FCARCGSILPLLQEFGSV-KCYTCKAHYEADN--YSKM---KFQYTIHFNTISVITNENI 285
FC C +I+ + E G C +C Y+ N Y+K +F TI + + I N+N+
Sbjct: 4 FCPNCHNIVLVHIEKGVYFYCKSCNYKYKIKNKIYNKFDCQQFNKTIPLDAVD-INNKNM 62
Query: 286 LHTDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKY 429
T + C KC D + TLQ+RSADE T+FY C+KC Y
Sbjct: 63 SKT--------QAVCPKCTNDEAYFYTLQIRSADEPSTIFYICVKCNY 102
>UniRef50_Q0DP65 Cluster: Os03g0711700 protein; n=4; Oryza
sativa|Rep: Os03g0711700 protein - Oryza sativa subsp.
japonica (Rice)
Length = 156
Score = 56.8 bits (131), Expect = 2e-07
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = +1
Query: 304 EGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETEN 444
E V ++C KC + Y T QLRSADEGQTVFY C C+++ EN
Sbjct: 109 ERATVNKECEKCKNPELQYYTKQLRSADEGQTVFYKCANCRHEFNEN 155
>UniRef50_Q9LNK0 Cluster: DNA-directed RNA polymerase subunit; n=3;
Arabidopsis thaliana|Rep: DNA-directed RNA polymerase
subunit - Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 56.4 bits (130), Expect = 3e-07
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Frame = +1
Query: 124 FCARCGSILPLLQEFGSVK--CYTCK-AHYEADNYSKMKFQYTIHFNTISVITNENILHT 294
FC CG++L + G+ + C TC Y K Q + + +V+T ++I
Sbjct: 3 FCPTCGNLLRY-EGGGNSRFFCSTCPYVAYIQRQVEIKKKQLLVKKSIEAVVTKDDI--- 58
Query: 295 DGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKY 429
P E C +CG+D+ + ++Q+RSADE ++ FY C+KC++
Sbjct: 59 --PTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEF 101
>UniRef50_Q58548 Cluster: DNA-directed RNA polymerase subunit M;
n=9; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit M - Methanococcus jannaschii
Length = 108
Score = 55.6 bits (128), Expect = 5e-07
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Frame = +1
Query: 124 FCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHF-NTISVITNENILHTDG 300
FC +C +++ L + G +KC C E +++Y H N IT ++ ++G
Sbjct: 4 FCPKCNNLM--LPKDGKLKCAVCGYEEETTAEGSKEYEYKEHLENKKEKIT---VIESEG 58
Query: 301 PEG-PVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
E P +C KCG++ + Q R ADE +T FY C KC
Sbjct: 59 LETLPTTRIECPKCGHNEAYWWLQQTRCADEPETRFYKCKKC 100
>UniRef50_A1CED1 Cluster: DNA-directed RNA polymerase subunit; n=7;
Pezizomycotina|Rep: DNA-directed RNA polymerase subunit
- Aspergillus clavatus
Length = 147
Score = 55.2 bits (127), Expect = 7e-07
Identities = 23/40 (57%), Positives = 29/40 (72%)
Frame = +1
Query: 313 VVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 432
+ + CA+CG M + T+QLRSADEG TVFYTC+ C YK
Sbjct: 78 LTQHTCARCGRKEMYFTTVQLRSADEGSTVFYTCV-CGYK 116
>UniRef50_Q9YEZ3 Cluster: Archaeal transcription factor S; n=2;
Thermoprotei|Rep: Archaeal transcription factor S -
Aeropyrum pernix
Length = 118
Score = 54.4 bits (125), Expect = 1e-06
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 7/115 (6%)
Frame = +1
Query: 106 LSTSTAFCARCGSILPLLQEFGS--VKCYTCKAHYEA--DNYSKMKFQYTIHF---NTIS 264
+S FC RCGSI+ ++ + C +C EA +++ + + T+ + I
Sbjct: 1 MSGRIKFCPRCGSIMYPKRDGARYLLVCKSCGYSEEASREDHQAYRMRVTVEKGPRDKIV 60
Query: 265 VITNENILHTDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKY 429
VI +E + +G V C KCG+D + + +Q RSADE T FY C +C+Y
Sbjct: 61 VIDDETPVGAQVLKGSVT---CPKCGHDEVYFWMMQTRSADEPMTRFYRCKRCRY 112
>UniRef50_Q5V5C5 Cluster: DNA-directed RNA-polymerase subunit M;
n=4; Halobacteriaceae|Rep: DNA-directed RNA-polymerase
subunit M - Haloarcula marismortui (Halobacterium
marismortui)
Length = 108
Score = 54.0 bits (124), Expect = 2e-06
Identities = 29/107 (27%), Positives = 52/107 (48%)
Frame = +1
Query: 124 FCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHTDGP 303
FC CGS++ E C +C + ++ + T S + + + + +
Sbjct: 3 FCDECGSMMKTDDE--RWVCGSCGYEKARNAEAEQEMAVTTQGQEESEVVDTSEVDAEDM 60
Query: 304 EGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETEN 444
GP +C +CG +R Y Q+R+ADE +T F+TC +C++K E+
Sbjct: 61 -GPTTGARCPECGNERAFYEMKQIRAADESETRFFTCTECEHKWRED 106
>UniRef50_A7DQB3 Cluster: Transcription termination factor Tfs; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep:
Transcription termination factor Tfs - Candidatus
Nitrosopumilus maritimus SCM1
Length = 105
Score = 54.0 bits (124), Expect = 2e-06
Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Frame = +1
Query: 277 ENILHTDGPEG----PVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKY 429
E+IL +G EG P ++ +C KCG+D + LQ RSADE T FY C KC+Y
Sbjct: 45 ESILAFEGNEGEESHPTIKIECEKCGHDEAIWWMLQTRSADEPTTQFYRCTKCQY 99
>UniRef50_A1RXU9 Cluster: Transcription termination factor Tfs; n=1;
Thermofilum pendens Hrk 5|Rep: Transcription termination
factor Tfs - Thermofilum pendens (strain Hrk 5)
Length = 109
Score = 54.0 bits (124), Expect = 2e-06
Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Frame = +1
Query: 124 FCARCGSIL-PLLQEFGSV-KCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHTD 297
FC +CG ++ P + V +C C E N + + I V+T ++ D
Sbjct: 3 FCPKCGGLMVPSVVNGKKVLRCSRCGYIVEKSNPGTYRVSHRIERTPKDVVT---LVDVD 59
Query: 298 GPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCK--YKE 435
PVV KC CG D+ LQ R+ DE T FY C KC+ Y+E
Sbjct: 60 VSVLPVVSFKCENCGNDKAYVYELQTRAGDEPATRFYICTKCRKVYRE 107
>UniRef50_O27369 Cluster: DNA-directed RNA polymerase subunit M;
n=6; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit M - Methanobacterium thermoautotrophicum
Length = 104
Score = 54.0 bits (124), Expect = 2e-06
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Frame = +1
Query: 124 FCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHT--D 297
FC +CG+++ F S + C+ YE D K+K +Y + + V E I+ T D
Sbjct: 3 FCPKCGAVM-----FPSEGKFKCQCGYEKDITDKLKDKYRV---SEEVEAKETIIFTGDD 54
Query: 298 GPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKY 429
P +C KCG + Q R ADE +T F+ C +CK+
Sbjct: 55 VNTLPTTRVECPKCGNMEAFWWLQQTRRADESETRFFRCTRCKH 98
>UniRef50_Q4N7G2 Cluster: Putative uncharacterized protein; n=2;
Theileria|Rep: Putative uncharacterized protein -
Theileria parva
Length = 252
Score = 53.6 bits (123), Expect = 2e-06
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = +1
Query: 316 VERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCK 426
V+ C KCG+D Y+T Q RSADEG ++ Y CIKCK
Sbjct: 209 VKYNCEKCGHDTHLYSTFQARSADEGMSIMYECIKCK 245
>UniRef50_Q2NEY4 Cluster: RpoM2; n=2; Methanobacteriaceae|Rep: RpoM2
- Methanosphaera stadtmanae (strain DSM 3091)
Length = 105
Score = 53.6 bits (123), Expect = 2e-06
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Frame = +1
Query: 124 FCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHTDGP 303
FC CG +L L + G + CY C +YE K Y I+ + V +NI+ TD
Sbjct: 3 FCPNCGKVL--LPKKGILHCYGC--NYEKKLSDDEKQDYVINKD---VSDKQNIIVTDDS 55
Query: 304 EG--PVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
P C +CG + + +Q+ +DE +T FY C KC
Sbjct: 56 INTHPTTRGLCYRCGNRELEWWMVQMHRSDEAETRFYRCTKC 97
>UniRef50_Q9LNT2 Cluster: T20H2.16 protein; n=1; Arabidopsis
thaliana|Rep: T20H2.16 protein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 122
Score = 53.2 bits (122), Expect = 3e-06
Identities = 24/58 (41%), Positives = 36/58 (62%)
Frame = +1
Query: 268 ITNENILHTDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETE 441
I ++N+ +T E +++ C KC + + Y T Q RSADEGQT +YTC C ++ TE
Sbjct: 67 IIDKNLAYTVTTE---IKKACEKCQHPELVYTTRQTRSADEGQTTYYTCPNCGHRFTE 121
>UniRef50_Q07271 Cluster: DNA-directed RNA polymerase subunit M;
n=4; Sulfolobaceae|Rep: DNA-directed RNA polymerase
subunit M - Sulfolobus acidocaldarius
Length = 111
Score = 52.8 bits (121), Expect = 4e-06
Identities = 36/105 (34%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Frame = +1
Query: 124 FCARCGSILPLLQEFGSV--KCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHTD 297
FC +CGS++ +E G KC C + + +N + K I S +L +D
Sbjct: 3 FCPKCGSMMMPRKENGKTVYKCSKC-GYIDTENQKEAKITTVIKH---SAKEKTLVLESD 58
Query: 298 GPE-GPVVER--KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
P+ G + R C CG D + LQ RSADE T FY C KC
Sbjct: 59 MPKTGVQLTRGISCPSCGNDEAYFWILQTRSADEPATRFYKCTKC 103
>UniRef50_Q7RCT6 Cluster: Putative transcription factor; n=2;
Plasmodium (Vinckeia)|Rep: Putative transcription factor
- Plasmodium yoelii yoelii
Length = 383
Score = 52.4 bits (120), Expect = 5e-06
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Frame = +1
Query: 106 LSTSTAFCARCGSILPLLQEFGSVKCYTCKAHYEADNY-SKMKF---QYTIHFNTISVIT 273
L +T C CG I+ L ++ Y + E +Y K F + T N I+
Sbjct: 265 LCENTIKCMYCGYIIEDLDINENIN-YNTNNYIELHSYREKYLFDNNKKTYWQNKIATFD 323
Query: 274 NENILHTDGPEGP--VVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 447
L +G G + KC C +D + + +Q RSADEG T+ Y C CK + T N+
Sbjct: 324 KNVELFKEGENGAYNITYEKCTDCDHDFLYFVNIQTRSADEGSTIIYYCPNCKKQTTVNN 383
>UniRef50_A7ARU9 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 256
Score = 52.4 bits (120), Expect = 5e-06
Identities = 21/45 (46%), Positives = 29/45 (64%)
Frame = +1
Query: 313 VVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 447
VV++ C CG++ Y+T Q RSADEG TV Y C +CK + N+
Sbjct: 212 VVKQLCDNCGFEEAYYSTFQARSADEGMTVMYECKRCKNRTVVNT 256
>UniRef50_O13896 Cluster: DNA-directed RNA polymerase III subunit
RPC10; n=1; Schizosaccharomyces pombe|Rep: DNA-directed
RNA polymerase III subunit RPC10 - Schizosaccharomyces
pombe (Fission yeast)
Length = 109
Score = 52.0 bits (119), Expect = 6e-06
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Frame = +1
Query: 124 FCARCGS-ILPLLQEFG--SVKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHT 294
FC CG+ ++ + E G + C TC H+ + + ++ V+ E +
Sbjct: 3 FCPTCGNHLIVAVDEEGRNAFDCRTCPYHFPISTFLYSRHEFA-QKEVDDVLGGEEAFES 61
Query: 295 DGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETEN 444
+ E KC +R + LQ+RSADE + FY C KCK++ EN
Sbjct: 62 NQQTEVTCEN--TKCDNNRAYFFQLQIRSADEPMSTFYRCTKCKFQWREN 109
>UniRef50_A5KAM3 Cluster: Putative uncharacterized protein; n=4;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium vivax
Length = 454
Score = 51.6 bits (118), Expect = 8e-06
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Frame = +1
Query: 127 CARCGSILPLLQEF----GSVKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHT 294
C CG+I+ ++ + G ++ E + K K Y + T S+ N ++
Sbjct: 344 CIYCGAIIDTIEMYDHWNGKESYIELNSYREKFIFDKNKKSYWKNKIT-SLEKNVSLFKE 402
Query: 295 DGPEG-PVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 447
D + + KC CG D + + +Q RSADEG T+ Y C CK + T N+
Sbjct: 403 DQNQAYNITYEKCTDCGNDFLHFINIQTRSADEGSTIIYFCPNCKKQTTVNN 454
>UniRef50_Q5CYY8 Cluster: RNA polymerase III subunit C11; n=1;
Cryptosporidium parvum Iowa II|Rep: RNA polymerase III
subunit C11 - Cryptosporidium parvum Iowa II
Length = 62
Score = 50.8 bits (116), Expect = 1e-05
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +1
Query: 328 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETEN 444
C KC + + LQ+RSADE T FYTC+KC +K EN
Sbjct: 24 CPKCSFSEAYFFQLQIRSADEPMTSFYTCVKCDFKWKEN 62
>UniRef50_Q74N12 Cluster: NEQ377; n=1; Nanoarchaeum equitans|Rep:
NEQ377 - Nanoarchaeum equitans
Length = 106
Score = 50.0 bits (114), Expect = 3e-05
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +1
Query: 325 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKY 429
KC KC + + Y TLQ R++DE +T+FY C+KC Y
Sbjct: 66 KCPKCSSEEVVYFTLQTRASDEAETIFYKCLKCGY 100
>UniRef50_A4R9N1 Cluster: Predicted protein; n=1; Magnaporthe
grisea|Rep: Predicted protein - Magnaporthe grisea (Rice
blast fungus) (Pyricularia grisea)
Length = 115
Score = 49.6 bits (113), Expect = 3e-05
Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Frame = +1
Query: 124 FCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNT---ISVITNENILHT 294
FC CG LP+ VKC C + + + F++ + N++ +
Sbjct: 5 FCNDCGDTLPISGN-PEVKCDCCGNMNKNTLINVTTVSSSRDFDSPLRLKEYGNKDAM-A 62
Query: 295 DGPE--GPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 447
PE P ++ C C + Y TLQ R ADEG TVFY C C K EN+
Sbjct: 63 SRPEMNWPSIDENCRFCPSKTVRYTTLQTRGADEGSTVFYFCEGCSQKWKENN 115
>UniRef50_Q2FPF9 Cluster: Transcription factor S; n=3;
Euryarchaeota|Rep: Transcription factor S -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 107
Score = 49.6 bits (113), Expect = 3e-05
Identities = 31/105 (29%), Positives = 44/105 (41%)
Frame = +1
Query: 124 FCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHTDGP 303
FC +CG +L + GS C +C E +KMK I ++ + + T
Sbjct: 4 FCEKCGKLLK--NQAGSFICTSCGWEKEGHGETKMKITDKRKEKEIVIVDDTESVRTL-- 59
Query: 304 EGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKET 438
P + KC CG + QLRSADE + F+ C K T
Sbjct: 60 --PTIAVKCPNCGNGEAFWWLRQLRSADESEVRFFRCTNSKCNHT 102
>UniRef50_A4R9M8 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 131
Score = 49.2 bits (112), Expect = 5e-05
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Frame = +1
Query: 124 FCARCGSIL-PLLQEFGSVKCYTCKA-HYEADNYSKMKFQYTIHFNTISVITNENILHTD 297
FCA C ++L P E +TC+ HY + + F+ ++ S + I+
Sbjct: 25 FCAECSNMLYPKEDEETRTLQFTCRTCHYTTNASNTCVFRNELNS---SASLHAGIIEGM 81
Query: 298 G--PEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETE 441
G P P ++ C CG+D M + Q R+A+ G Y C++C +T+
Sbjct: 82 GKDPTLPRAKKTCQYCGFDEMVFFQAQQRTAETGMKQIYVCVECSKPQTD 131
>UniRef50_UPI00004998C5 Cluster: RNA polymerase III subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: RNA polymerase III
subunit - Entamoeba histolytica HM-1:IMSS
Length = 107
Score = 48.8 bits (111), Expect = 6e-05
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Frame = +1
Query: 118 TAFCARCGSILPLLQEFGS---VKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENIL 288
T FCA CG++L + E G+ KC TC Y+ K+ ++ + I + E
Sbjct: 2 TFFCANCGNLLVV--ERGTELYFKCNTCP--YKFTFNKKIVYESELKRKQIDAVLGEE-- 55
Query: 289 HTDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTC--IKCKYK 432
E C KCG++ + +Q+RSADE T FY C C Y+
Sbjct: 56 --QWKNAQKTEIICEKCGHNSAYFMQIQIRSADEPMTTFYKCANFDCGYQ 103
>UniRef50_Q8PX24 Cluster: DNA-directed RNA polymerase subunit M;
n=3; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit M - Methanosarcina mazei (Methanosarcina frisia)
Length = 107
Score = 48.8 bits (111), Expect = 6e-05
Identities = 31/102 (30%), Positives = 48/102 (47%)
Frame = +1
Query: 124 FCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHTDGP 303
FC +C S++ + G+ C C + ++ +K F + V+ E T G
Sbjct: 6 FCTKCKSMM--FPKDGNYHCRKCGSTIPIESDAK-NFVSKAKIDDHEVVVLEGE-QTSGL 61
Query: 304 EGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKY 429
P KC +CG + ++ QLRSADE +T F+ C KC Y
Sbjct: 62 --PTTNAKCPECGNNTAAWWLRQLRSADESETRFFKCTKCGY 101
>UniRef50_Q4CXN7 Cluster: Transcription elongation factor S-II,
putative; n=2; Trypanosoma cruzi|Rep: Transcription
elongation factor S-II, putative - Trypanosoma cruzi
Length = 477
Score = 47.6 bits (108), Expect = 1e-04
Identities = 20/35 (57%), Positives = 23/35 (65%)
Frame = +1
Query: 325 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKY 429
KC CG +R SY Q RSADE T F TC++CKY
Sbjct: 438 KCPNCGKNRCSYYEQQTRSADEPTTKFVTCLECKY 472
>UniRef50_A2EBM6 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 109
Score = 47.6 bits (108), Expect = 1e-04
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Frame = +1
Query: 121 AFCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTISV---ITNENILH 291
+FC CG++L L+ G C+A + Q + N + V ITN++ +
Sbjct: 5 SFCPACGNLL-LVDTSGDRTQLKCRACNFVMGFVGRTVQ-SAPLNPLDVKALITNDDAMS 62
Query: 292 TDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
+ +C KCG++ + +Q+RSADE T+F+ C KC
Sbjct: 63 FQNK----TQARCDKCGHNEAFFTEIQIRSADEPATLFFKCCKC 102
>UniRef50_Q5CUJ8 Cluster: Putative uncharacterized protein; n=1;
Cryptosporidium parvum Iowa II|Rep: Putative
uncharacterized protein - Cryptosporidium parvum Iowa II
Length = 203
Score = 47.2 bits (107), Expect = 2e-04
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +1
Query: 304 EGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 447
+ P ++ C +C ++ + Q RSADEG TV Y C KC+++ N+
Sbjct: 156 KAPKIQEICPECSHNEAFFTQFQARSADEGTTVMYECCKCQHRRVINN 203
>UniRef50_Q15ES4 Cluster: RNA polymerase III subunit C11-like
protein; n=2; Schistosoma|Rep: RNA polymerase III
subunit C11-like protein - Schistosoma mansoni (Blood
fluke)
Length = 115
Score = 47.2 bits (107), Expect = 2e-04
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +1
Query: 319 ERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETE 441
+ KC KC + R + +Q RSADE T+ Y+CIKC + TE
Sbjct: 74 DEKCPKCSHTRAYFVQMQTRSADEPSTIKYSCIKCHHIWTE 114
>UniRef50_Q8ZTX9 Cluster: DNA-directed RNA polymerase subunit M;
n=7; Thermoprotei|Rep: DNA-directed RNA polymerase
subunit M - Pyrobaculum aerophilum
Length = 110
Score = 46.8 bits (106), Expect = 2e-04
Identities = 37/105 (35%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Frame = +1
Query: 124 FCARCGSILPLLQEFGSVKCYTC-KAHYEADNYSKMKFQYTIHFNTISVITNENILHTDG 300
FC S+L +++ G+V C K YE + +K +Y T N I+ D
Sbjct: 3 FCPNDKSLLIPVRK-GNVTVLRCPKCGYEEEVSQDVKNRY--QSKTAVESRNSVIVVADT 59
Query: 301 -PEGPVVE-RKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKY 429
P P V+ R C KCG+D Q R+ADE T FY C KC Y
Sbjct: 60 TPNLPKVKTRGCPKCGHDEAYVWVQQTRAADEPPTRFYRCTKCGY 104
>UniRef50_Q9P9I8 Cluster: Archaeal transcription factor S; n=2;
Methanococcaceae|Rep: Archaeal transcription factor S -
Methanococcus thermolithotrophicus
Length = 105
Score = 46.8 bits (106), Expect = 2e-04
Identities = 31/100 (31%), Positives = 44/100 (44%)
Frame = +1
Query: 124 FCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHTDGP 303
FC +C +I+ L + G +KC C E N ++ +Y + I E + D
Sbjct: 4 FCPKCNNIM--LPKNGRLKCTVCGFEEELGNRTE---EYELK-EKIEAKKQEVTVIEDVD 57
Query: 304 EGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
P +C CG S+ Q R ADE +T FY C KC
Sbjct: 58 TLPTTRIECPSCGNMEASWWLQQTRCADEPETRFYKCKKC 97
>UniRef50_Q8SSB3 Cluster: DNA-DIRECTED RNA POLYMERASE III 12.5kDa
SUBUNIT; n=1; Encephalitozoon cuniculi|Rep: DNA-DIRECTED
RNA POLYMERASE III 12.5kDa SUBUNIT - Encephalitozoon
cuniculi
Length = 104
Score = 46.4 bits (105), Expect = 3e-04
Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Frame = +1
Query: 325 KCAK---CGYDRMSYATLQLRSADEGQTVFYTCIKCK 426
KC K CG + +S+ LQ RSADE T+FY CI+CK
Sbjct: 63 KCGKRCECGSEEVSFVELQTRSADEPMTIFYKCIRCK 99
>UniRef50_Q0D7N2 Cluster: Os07g0229700 protein; n=4;
Magnoliophyta|Rep: Os07g0229700 protein - Oryza sativa
subsp. japonica (Rice)
Length = 379
Score = 45.6 bits (103), Expect = 6e-04
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 301 PEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
P+ + KC +CG + +Y LQ RSADE T F TC+ C
Sbjct: 332 PKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNC 372
>UniRef50_A7Q3Y6 Cluster: Chromosome chr13 scaffold_48, whole genome
shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
chr13 scaffold_48, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 309
Score = 45.6 bits (103), Expect = 6e-04
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 301 PEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
P+ + KC +CG + +Y LQ RSADE T F TC+ C
Sbjct: 262 PKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNC 302
>UniRef50_Q4A328 Cluster: Transcription factor S-II (TFIIS) family
protein; n=1; Emiliania huxleyi virus 86|Rep:
Transcription factor S-II (TFIIS) family protein -
Emiliania huxleyi virus 86
Length = 150
Score = 45.2 bits (102), Expect = 7e-04
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +1
Query: 328 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 432
C KCG + A Q RSADEG T+F+ C+KC K
Sbjct: 112 CNKCGSSEILMAMAQTRSADEGTTMFFRCVKCNQK 146
>UniRef50_Q97AQ6 Cluster: Transcription factor [TFIIS/RPB9]; n=5;
Thermoplasmatales|Rep: Transcription factor [TFIIS/RPB9]
- Thermoplasma volcanium
Length = 106
Score = 45.2 bits (102), Expect = 7e-04
Identities = 31/111 (27%), Positives = 48/111 (43%)
Frame = +1
Query: 109 STSTAFCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENIL 288
S+ + FC +CGS++ + G C +C YE K + N I +
Sbjct: 3 SSLSMFCPKCGSLMTPVN--GRYVCPSCG--YEVSK-KKEDLKIVNKSNDKETIMIREEV 57
Query: 289 HTDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETE 441
+ + + C +C + Y Q RSADE +T FYTC +C Y+ E
Sbjct: 58 SAEPLDSDAI---CPRCHHKGARYVLKQTRSADEPETKFYTCEECGYRWRE 105
>UniRef50_A7D318 Cluster: Transcription factor TFIIS; n=1;
Halorubrum lacusprofundi ATCC 49239|Rep: Transcription
factor TFIIS - Halorubrum lacusprofundi ATCC 49239
Length = 108
Score = 44.8 bits (101), Expect = 0.001
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +1
Query: 310 PVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETEN 444
P C +CG DR + Q+RSADE +T F+ C +C++K E+
Sbjct: 62 PKTTAHCPECGNDRAYWYMQQIRSADESETRFFVCTECEHKWRED 106
>UniRef50_Q4DC35 Cluster: DNA-directed RNA polymerase subunit; n=2;
Trypanosoma cruzi|Rep: DNA-directed RNA polymerase
subunit - Trypanosoma cruzi
Length = 167
Score = 44.0 bits (99), Expect = 0.002
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 13/116 (11%)
Frame = +1
Query: 124 FCARCGSILPLLQEFGSVK--CYTC-------KAHYEADNYSKMKFQYTIHFNTISVITN 276
FC CG++L + + + C +C H N+S +KF T+ +
Sbjct: 48 FCPFCGTLLLIEPHHPTNRFACSSCTYVAPIPSTHLLTVNHSLLKFNKTVEDDANVKANG 107
Query: 277 ENILHTDGPEGPVVERKCAK----CGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 432
+ + G ++ +C C +R Y +Q+RSADE T F+ C+KC ++
Sbjct: 108 IKTKNEEVDGGQLITVRCQNDEKFCDGNRAHYVQIQMRSADEPATTFFKCLKCGFQ 163
>UniRef50_A0RXH6 Cluster: DNA-directed RNA polymerase, subunit
M/Transcription elongation factor TFIIS; n=1;
Cenarchaeum symbiosum|Rep: DNA-directed RNA polymerase,
subunit M/Transcription elongation factor TFIIS -
Cenarchaeum symbiosum
Length = 103
Score = 44.0 bits (99), Expect = 0.002
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +1
Query: 316 VERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKY 429
++ +C KCG+ + LQ RSADE T FY CIKC +
Sbjct: 60 IKIECEKCGHGEAVWWMLQTRSADEPTTQFYRCIKCSH 97
>UniRef50_Q2H0C1 Cluster: DNA-directed RNA polymerase subunit; n=2;
Sordariales|Rep: DNA-directed RNA polymerase subunit -
Chaetomium globosum (Soil fungus)
Length = 139
Score = 43.6 bits (98), Expect = 0.002
Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Frame = +1
Query: 115 STAFCARCGSILP--LLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNE-NI 285
S FC CG++LP + E + C C A D+ K T + S + + +I
Sbjct: 6 SLIFCTDCGNLLPASMGSEKNILHCDCCGAE-NRDHPWKTVTTRTKPSDFPSALRQKLSI 64
Query: 286 LHTDGPEGPVVER-----KCAKCGYDRMSYATLQLRSADEGQTVFYTC 414
+ T ER +C KCG + Y+ +Q RSADEG T+ Y C
Sbjct: 65 VQTVERHKVQTERIDSNTECPKCGKTGIRYSEVQQRSADEGSTIIYNC 112
>UniRef50_A7TNI5 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 323
Score = 43.6 bits (98), Expect = 0.002
Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +1
Query: 268 ITNENILHTDGP--EGPVVER-KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
IT +N+ + G E V +R C KC ++SY LQ RSADE T F TC C
Sbjct: 262 ITRQNLFNAQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEAC 316
>UniRef50_A3LW94 Cluster: DNA-directed RNA polymerase subunit; n=10;
Fungi/Metazoa group|Rep: DNA-directed RNA polymerase
subunit - Pichia stipitis (Yeast)
Length = 111
Score = 43.6 bits (98), Expect = 0.002
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Frame = +1
Query: 121 AFCARCGSILPLLQ-EFGSVK--CYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILH 291
+FC C ++L + + G + C TC ++ + S + + V+ +
Sbjct: 3 SFCPNCSNMLLISAGDDGCNRFYCPTCPYEFKINGLSMFERKKLYRKEVDDVLGGDGAW- 61
Query: 292 TDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETEN 444
D + + CG ++ + LQ+RSADE T FY C+ C +K EN
Sbjct: 62 -DNVDQTSAQCPVDSCGGNKAYFFQLQIRSADEPMTTFYKCVNCGHKWKEN 111
>UniRef50_Q2U4B9 Cluster: Transcription elongation factor
TFIIS/Cofactor of enhancer-binding protein Sp1; n=8;
Eurotiomycetidae|Rep: Transcription elongation factor
TFIIS/Cofactor of enhancer-binding protein Sp1 -
Aspergillus oryzae
Length = 304
Score = 43.2 bits (97), Expect = 0.003
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +1
Query: 325 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
+C KCG +++Y Q RSADE T+F TC+ C
Sbjct: 266 QCGKCGQRKVTYTEAQTRSADEPMTLFCTCLNC 298
>UniRef50_A4S3C9 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 173
Score = 42.7 bits (96), Expect = 0.004
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +1
Query: 325 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
KC KC + +Y LQ RSADE T F TC++C
Sbjct: 134 KCGKCKQRKCTYYQLQTRSADEPMTTFVTCVEC 166
>UniRef50_Q4DDP9 Cluster: DNA-directed RNA polymerase, putative;
n=2; Trypanosoma cruzi|Rep: DNA-directed RNA polymerase,
putative - Trypanosoma cruzi
Length = 158
Score = 42.7 bits (96), Expect = 0.004
Identities = 21/44 (47%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 319 ERKCAKCGYDRMSYA-TLQLRSADEGQTVFYTCIKCKYKETENS 447
E C CG R Q+RSADEGQT+FY CI C + NS
Sbjct: 115 EAFCGTCGVHRQCKVFARQIRSADEGQTIFYQCITCNAEWQLNS 158
>UniRef50_Q2P9W0 Cluster: RNA polymerase I subunit RPA12; n=2;
Trypanosoma brucei|Rep: RNA polymerase I subunit RPA12 -
Trypanosoma brucei brucei
Length = 151
Score = 42.7 bits (96), Expect = 0.004
Identities = 22/44 (50%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 319 ERKCAKCGYDRMSYA-TLQLRSADEGQTVFYTCIKCKYKETENS 447
E C KCG R Q+RSADEGQTVFY C C + NS
Sbjct: 108 EAFCEKCGVPRKCKVFARQIRSADEGQTVFYQCTSCDSEWQLNS 151
>UniRef50_Q9ZVH8 Cluster: Putative elongation factor; n=5;
Magnoliophyta|Rep: Putative elongation factor -
Arabidopsis thaliana (Mouse-ear cress)
Length = 378
Score = 42.3 bits (95), Expect = 0.005
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +1
Query: 325 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
KC +CG + +Y +Q RSADE T + TC+ C
Sbjct: 339 KCGRCGQRKCTYYQMQTRSADEPMTTYVTCVNC 371
>UniRef50_A4RUS3 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 120
Score = 42.3 bits (95), Expect = 0.005
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +1
Query: 328 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
C C +D + +Q+RSADE +VFY C+KC
Sbjct: 82 CPGCAHDEAYFMQIQIRSADEPMSVFYKCVKC 113
>UniRef50_Q5V537 Cluster: DNA-directed RNA-polymerase subunit M;
n=6; Halobacteriaceae|Rep: DNA-directed RNA-polymerase
subunit M - Haloarcula marismortui (Halobacterium
marismortui)
Length = 107
Score = 41.9 bits (94), Expect = 0.007
Identities = 28/106 (26%), Positives = 46/106 (43%)
Frame = +1
Query: 124 FCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHTDGP 303
FC CGS++ + + C +C A D F T + +I E + +G
Sbjct: 3 FCDDCGSMMHA--DGDEMVCQSCGARVAKDEDRAAAFVSTDEQSDDELIETEEGSNFEG- 59
Query: 304 EGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETE 441
+ + C +CG+ + Y Q SADE T F+ C +C ++ E
Sbjct: 60 KPTADDVTCEECGHGKAWYTIKQTGSADEPPTRFFKCQECGHRWRE 105
>UniRef50_A3DM83 Cluster: Transcription factor S; n=1;
Staphylothermus marinus F1|Rep: Transcription factor S -
Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
F1)
Length = 104
Score = 41.9 bits (94), Expect = 0.007
Identities = 18/37 (48%), Positives = 21/37 (56%)
Frame = +1
Query: 319 ERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKY 429
E C KCGY Y +Q R+ADE T FY C +C Y
Sbjct: 62 EVTCPKCGYHEAYYWIVQTRAADEPPTRFYKCRRCGY 98
>UniRef50_P07273 Cluster: Transcription elongation factor S-II; n=5;
Saccharomycetales|Rep: Transcription elongation factor
S-II - Saccharomyces cerevisiae (Baker's yeast)
Length = 309
Score = 41.9 bits (94), Expect = 0.007
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +1
Query: 259 ISVITNENILHTDGP--EGPVVER-KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
I I +N+ + G E V +R C KC ++SY LQ RSADE T F TC C
Sbjct: 245 IEEIAKQNLYNAQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEAC 302
>UniRef50_P49373 Cluster: Transcription elongation factor S-II; n=1;
Schizosaccharomyces pombe|Rep: Transcription elongation
factor S-II - Schizosaccharomyces pombe (Fission yeast)
Length = 293
Score = 41.9 bits (94), Expect = 0.007
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 268 ITNENILHTDG--PEGPVVER-KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
+ EN+ H G P+ V + C KC ++SY +Q RSADE T F C C
Sbjct: 232 LEQENLFHAQGAKPQKAVTDLFTCGKCKQKKVSYYQMQTRSADEPMTTFCECTVC 286
>UniRef50_Q586X9 Cluster: Transcription elongation factor S-II,
putative; n=1; Trypanosoma brucei|Rep: Transcription
elongation factor S-II, putative - Trypanosoma brucei
Length = 467
Score = 41.5 bits (93), Expect = 0.009
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +1
Query: 325 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETEN 444
+C +C + LQ+RSADE T F CIKCK+ +EN
Sbjct: 428 ECPECHGRECEWRELQIRSADEPTTKFIKCIKCKHNWSEN 467
>UniRef50_Q4Q100 Cluster: Transcription factor S-II-like protein;
n=3; Leishmania|Rep: Transcription factor S-II-like
protein - Leishmania major
Length = 254
Score = 41.5 bits (93), Expect = 0.009
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 313 VVERKCAKCGYDRMSYA-TLQLRSADEGQTVFYTCIKCKYKETENS 447
+ E C CG R Q RSADEGQT+F+ C KC + +NS
Sbjct: 209 IEEAFCEMCGVHRPCKTFARQTRSADEGQTIFFQCTKCSSEWQQNS 254
>UniRef50_Q5KEF1 Cluster: RNA polymerase III smallest subunit,
putative; n=2; Filobasidiella neoformans|Rep: RNA
polymerase III smallest subunit, putative - Cryptococcus
neoformans (Filobasidiella neoformans)
Length = 132
Score = 41.5 bits (93), Expect = 0.009
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +1
Query: 328 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 447
C KC + R + +Q+RSADE T FY C +C ++ E S
Sbjct: 68 CPKCDHRRAYFRQMQIRSADEPMTTFYKCCECGHQWREVS 107
>UniRef50_P52652 Cluster: Putative transcription elongation factor
S-II; n=2; Caenorhabditis|Rep: Putative transcription
elongation factor S-II - Caenorhabditis elegans
Length = 308
Score = 41.5 bits (93), Expect = 0.009
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +1
Query: 325 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
KC KCG +Y LQ RS+DE T F C++C
Sbjct: 269 KCGKCGKKNCTYTQLQTRSSDEPMTTFVFCLEC 301
>UniRef50_Q387Z6 Cluster: RNA polymerase III C11 subunit, putative;
n=1; Trypanosoma brucei|Rep: RNA polymerase III C11
subunit, putative - Trypanosoma brucei
Length = 126
Score = 41.1 bits (92), Expect = 0.012
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Frame = +1
Query: 307 GPVVERKCA----KCGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 432
G V+ +C +C DR Y +Q+RSADE T F+ C+KC ++
Sbjct: 77 GQVITVRCQNDEKQCDGDRAHYVQIQMRSADEPATTFFKCLKCGFQ 122
>UniRef50_A0B7Y7 Cluster: Transcription factor TFIIS; n=1;
Methanosaeta thermophila PT|Rep: Transcription factor
TFIIS - Methanosaeta thermophila (strain DSM 6194 / PT)
(Methanothrixthermophila (strain DSM 6194 / PT))
Length = 85
Score = 41.1 bits (92), Expect = 0.012
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 283 ILHTDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
+L + P + KC +CG D + QLR+ADE + F+ C KC
Sbjct: 31 VLEQESAGLPTTKAKCPECGNDTAYWWLRQLRAADESEVRFFRCTKC 77
>UniRef50_Q4N8B9 Cluster: Transcription elongation factor SII,
putative; n=1; Theileria parva|Rep: Transcription
elongation factor SII, putative - Theileria parva
Length = 324
Score = 40.7 bits (91), Expect = 0.016
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +1
Query: 325 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCK 426
KC KC +Y LQ RS+DE T F TC+ CK
Sbjct: 286 KCNKCNSKVTTYYQLQTRSSDEPMTTFVTCLNCK 319
>UniRef50_Q8SS71 Cluster: TRANSCRIPTION ELONGATION FACTOR SII; n=1;
Encephalitozoon cuniculi|Rep: TRANSCRIPTION ELONGATION
FACTOR SII - Encephalitozoon cuniculi
Length = 257
Score = 40.7 bits (91), Expect = 0.016
Identities = 17/30 (56%), Positives = 19/30 (63%)
Frame = +1
Query: 325 KCAKCGYDRMSYATLQLRSADEGQTVFYTC 414
KC+KCG + SY LQ RS DE T F TC
Sbjct: 219 KCSKCGERKCSYRQLQTRSGDEPMTTFVTC 248
>UniRef50_A7F3K8 Cluster: Predicted protein; n=1; Sclerotinia
sclerotiorum 1980|Rep: Predicted protein - Sclerotinia
sclerotiorum 1980
Length = 95
Score = 40.7 bits (91), Expect = 0.016
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = +1
Query: 316 VERKCAK----CGYDRMSYATLQLRSADEGQTVFYTCIKCKY 429
V+R C C + M++ +Q+R ADEG T+ YTC +C Y
Sbjct: 48 VKRSCENPNIDCPAEEMTFRNVQMRGADEGSTIIYTCPECGY 89
>UniRef50_A6QWZ4 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 378
Score = 40.3 bits (90), Expect = 0.021
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 325 KCAKCGYDRMSYATLQLRSADEGQTVFYTCI 417
+C KCG +++Y Q RSADE T+F TC+
Sbjct: 334 QCGKCGQKKVTYTEAQTRSADEPMTLFCTCV 364
>UniRef50_Q04307 Cluster: DNA-directed RNA polymerase III subunit
RPC10; n=11; Ascomycota|Rep: DNA-directed RNA polymerase
III subunit RPC10 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 110
Score = 40.3 bits (90), Expect = 0.021
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 337 CGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETEN 444
CG + + LQ+RSADE T FY C+ C ++ EN
Sbjct: 75 CGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN 110
>UniRef50_UPI0000E47C8A Cluster: PREDICTED: similar to
ENSANGP00000027484; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to ENSANGP00000027484
- Strongylocentrotus purpuratus
Length = 255
Score = 39.9 bits (89), Expect = 0.028
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +1
Query: 256 TISVITNENILHTDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 432
T I + + HT+G ++ C KC +Y +Q RSADE T F C C ++
Sbjct: 195 TKEAINDHQLAHTEGTRSALLT--CGKCRKKNCTYNQMQTRSADEPMTTFVFCNDCGHR 251
>UniRef50_A6RN27 Cluster: Transcription elongation factor S-II; n=6;
Pezizomycotina|Rep: Transcription elongation factor S-II
- Botryotinia fuckeliana B05.10
Length = 301
Score = 39.9 bits (89), Expect = 0.028
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +1
Query: 328 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 432
C KCG ++SY+ Q RSADE T F C C ++
Sbjct: 263 CGKCGQKKVSYSQAQTRSADEPMTTFCECQVCGHR 297
>UniRef50_Q7QQW3 Cluster: DNA-directed RNA polymerase subunit; n=2;
Giardia intestinalis|Rep: DNA-directed RNA polymerase
subunit - Giardia lamblia ATCC 50803
Length = 105
Score = 39.5 bits (88), Expect = 0.036
Identities = 24/107 (22%), Positives = 46/107 (42%)
Frame = +1
Query: 124 FCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHTDGP 303
FC CG++L L++ G V+ Y Y ++ T+ ++ + T
Sbjct: 3 FCPCCGNLL-LIELSGDVQFYCKTCAYRYTLSGQISRSLTLTRKSVDPVLGGE---TAWQ 58
Query: 304 EGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETEN 444
+ C C + + +Q+RS+DE + FY C +C ++ E+
Sbjct: 59 GADKTQNPCPVCAFPDAFWIQMQIRSSDEPMSRFYRCCQCAHQWRED 105
>UniRef50_A5JZL5 Cluster: Transcription elongation factor, putative;
n=5; Plasmodium|Rep: Transcription elongation factor,
putative - Plasmodium vivax
Length = 435
Score = 39.5 bits (88), Expect = 0.036
Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +1
Query: 319 ERKCAKC-GYDRMSYATLQLRSADEGQTVFYTCIKC 423
E +C KC GY+ + Y LQ RS+DE T F TC+KC
Sbjct: 395 EFQCFKCKGYETV-YHQLQTRSSDEPMTTFVTCLKC 429
>UniRef50_A3LRC5 Cluster: Predicted protein; n=5;
Saccharomycetales|Rep: Predicted protein - Pichia
stipitis (Yeast)
Length = 294
Score = 39.5 bits (88), Expect = 0.036
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 328 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
C KC + ++SY +Q RSADE T F TC C
Sbjct: 256 CGKCKHKKVSYYQMQTRSADEPLTTFCTCENC 287
>UniRef50_UPI0000499ED2 Cluster: hypothetical protein 230.t00020;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
protein 230.t00020 - Entamoeba histolytica HM-1:IMSS
Length = 78
Score = 39.1 bits (87), Expect = 0.048
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 319 ERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKY 429
E KC KCG ++ Q RSADE T F TC C +
Sbjct: 36 EFKCGKCGSRKIQETLAQTRSADEPMTRFLTCASCGF 72
>UniRef50_A0CQT2 Cluster: Chromosome undetermined scaffold_24, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_24,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 104
Score = 39.1 bits (87), Expect = 0.048
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 313 VVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 432
+ + +C KCG + + Q R ADE T+ + CIKC +K
Sbjct: 60 ITDEQCDKCGCLKAFFWEFQTRGADEQSTISFECIKCGHK 99
>UniRef50_Q4P1X5 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 315
Score = 39.1 bits (87), Expect = 0.048
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 325 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 432
+C +C + Y +Q RSADE T F TC C +K
Sbjct: 276 QCGRCKQRKTRYYQMQTRSADEPMTTFVTCTNCNHK 311
>UniRef50_Q4UH96 Cluster: Transcription elongation factor, putative;
n=1; Theileria annulata|Rep: Transcription elongation
factor, putative - Theileria annulata
Length = 418
Score = 38.7 bits (86), Expect = 0.064
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +1
Query: 325 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
KC KC +Y LQ RS+DE T F TC+ C
Sbjct: 380 KCNKCNSKITTYYQLQTRSSDEPMTTFVTCLNC 412
>UniRef50_Q5YFI0 Cluster: Transcription elongation factor TFIIS;
n=2; Singapore grouper iridovirus|Rep: Transcription
elongation factor TFIIS - Singapore grouper iridovirus
Length = 92
Score = 38.3 bits (85), Expect = 0.084
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 301 PEGPVVER--KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETE 441
P PV E +C KCG ++ Q RSADE TVF C C + T+
Sbjct: 44 PMAPVEEGTLQCPKCGCKKVHVVQRQTRSADEPMTVFAVCSNCGKRWTQ 92
>UniRef50_Q4Q3Q4 Cluster: Transcription elongation factor-like
protein; n=3; Leishmania|Rep: Transcription elongation
factor-like protein - Leishmania major
Length = 473
Score = 38.3 bits (85), Expect = 0.084
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 325 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETE 441
KC +CG ++ Q RSADE T + TC+ CK T+
Sbjct: 434 KCGRCGKRHCTFYEQQTRSADEPTTKYITCLDCKNTWTQ 472
>UniRef50_Q6C6I8 Cluster: Similar to DEHA0C15686g Debaryomyces
hansenii; n=1; Yarrowia lipolytica|Rep: Similar to
DEHA0C15686g Debaryomyces hansenii - Yarrowia lipolytica
(Candida lipolytica)
Length = 295
Score = 38.3 bits (85), Expect = 0.084
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 328 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
C KC ++SY +Q RSADE T F TC C
Sbjct: 257 CGKCKQKKVSYYQMQTRSADEPLTTFCTCENC 288
>UniRef50_Q9YPH8 Cluster: Transcription elongation factor SII; n=8;
Chlorovirus|Rep: Transcription elongation factor SII -
Chlorella virus
Length = 180
Score = 37.9 bits (84), Expect = 0.11
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +1
Query: 295 DGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
D P+G + +C KC + SY +Q RSADE TVF C C
Sbjct: 135 DMPDGML---QCGKCKSRKTSYYEMQTRSADEPMTVFAKCHSC 174
>UniRef50_A7AWE5 Cluster: Transcription factor S-II (TFIIS)and
transcription factor S-II (TFIIS) central domain
containing protein; n=1; Babesia bovis|Rep:
Transcription factor S-II (TFIIS)and transcription
factor S-II (TFIIS) central domain containing protein -
Babesia bovis
Length = 302
Score = 37.9 bits (84), Expect = 0.11
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +1
Query: 325 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
KC KC Y LQ RS+DE T F TC++C
Sbjct: 264 KCLKCHSMETVYYQLQTRSSDEPMTTFVTCLEC 296
>UniRef50_Q0UVI1 Cluster: Predicted protein; n=1; Phaeosphaeria
nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 301
Score = 37.9 bits (84), Expect = 0.11
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 319 ERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
E +C KC +SY+ Q RSADE T F C+ C
Sbjct: 260 EFQCGKCKKKMVSYSQAQTRSADEPMTTFCECMNC 294
>UniRef50_Q9N4B7 Cluster: DNA-directed RNA polymerase subunit; n=9;
Bilateria|Rep: DNA-directed RNA polymerase subunit -
Caenorhabditis elegans
Length = 108
Score = 37.5 bits (83), Expect = 0.15
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 313 VVERKCAKCGYDRMSYATLQLRSADEGQTVFYTC 414
V + C C + R + LQ RSADE T+FY C
Sbjct: 64 VTDETCPVCSHGRAYFMQLQTRSADEPSTIFYRC 97
>UniRef50_Q5CVE1 Cluster: Transcription elongation factor TFIIS;
n=2; Cryptosporidium|Rep: Transcription elongation
factor TFIIS - Cryptosporidium parvum Iowa II
Length = 332
Score = 37.5 bits (83), Expect = 0.15
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 328 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
C KC ++ +Y +Q RSADE T F C+ C
Sbjct: 295 CGKCKTNKTTYYQMQTRSADEPMTTFVRCLNC 326
>UniRef50_A7ASV0 Cluster: Transcription factor S-II protein,
putative; n=3; Piroplasmida|Rep: Transcription factor
S-II protein, putative - Babesia bovis
Length = 109
Score = 37.5 bits (83), Expect = 0.15
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 1/107 (0%)
Frame = +1
Query: 124 FCARCGSILPLLQEFGSVKCYTC-KAHYEADNYSKMKFQYTIHFNTISVITNENILHTDG 300
FC C S+L ++C + YE S+ + T++ I +
Sbjct: 4 FCPLCHSVLFFSCNPPQTSTFSCMRCVYELP-ISRRYHKSTVYTQFEKEIPRSPHSVNEF 62
Query: 301 PEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETE 441
P + C C + ++Q RSADE T F+ C C+++ E
Sbjct: 63 EHAPKIIAVCPSCHNKEAYFMSIQTRSADEPMTQFFVCTACRHRWKE 109
>UniRef50_Q197A5 Cluster: Putative uncharacterized protein; n=1;
Aedes taeniorhynchus iridescent virus|Rep: Putative
uncharacterized protein - Aedes taeniorhynchus
iridescent virus
Length = 137
Score = 37.1 bits (82), Expect = 0.19
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 325 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETE 441
+C KC ++ + + Q RS DE T+F +C CK + TE
Sbjct: 99 RCGKCDCTKILWFSKQTRSMDEPTTIFASCSNCKTRWTE 137
>UniRef50_Q0W2J5 Cluster: Archaeal transcription factor S; n=4;
Euryarchaeota|Rep: Archaeal transcription factor S -
Uncultured methanogenic archaeon RC-I
Length = 106
Score = 37.1 bits (82), Expect = 0.19
Identities = 28/100 (28%), Positives = 39/100 (39%)
Frame = +1
Query: 124 FCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHTDGP 303
FC +C SI+ G VKC C H + M + + + D
Sbjct: 3 FCPKCKSIMRP-GGGGMVKCRKC-GHEKKAQAGNMIVGGPVKDQEREITVLDE--KQDAG 58
Query: 304 EGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
E KC CG + + QLRSADE + F+ C +C
Sbjct: 59 LPTTEEVKCPDCGNQKAYWWMRQLRSADESEVRFFRCTEC 98
>UniRef50_A0DS61 Cluster: Chromosome undetermined scaffold_61, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_61,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 300
Score = 36.7 bits (81), Expect = 0.26
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 328 CAKCGYDRMSYAT-LQLRSADEGQTVFYTCIKCKYKETEN 444
C CG +M +Q R++DE T FY C+ C ET N
Sbjct: 260 CNNCGQKQMKLVNEIQTRASDEPSTKFYECLNCGIGETTN 299
>UniRef50_Q677Z7 Cluster: DNA-directed RNA polymerase subunit M;
n=1; Lymphocystis disease virus - isolate China|Rep:
DNA-directed RNA polymerase subunit M - Lymphocystis
disease virus - isolate China
Length = 79
Score = 36.3 bits (80), Expect = 0.34
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 325 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 432
KC KC + + +Q+RSADE ++ TC C YK
Sbjct: 40 KCKKCKKNNVLSTHIQIRSADEPMSLAATCYSCGYK 75
>UniRef50_Q1JT63 Cluster: Transcription elongation factor s-II,
putative; n=1; Toxoplasma gondii RH|Rep: Transcription
elongation factor s-II, putative - Toxoplasma gondii RH
Length = 418
Score = 36.3 bits (80), Expect = 0.34
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 328 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
C KC + Y +Q RS+DE T F TC++C
Sbjct: 381 CFKCRTTKTVYFQMQTRSSDEPMTTFVTCLEC 412
>UniRef50_Q9Y2Y1 Cluster: DNA-directed RNA polymerase III subunit
RPC10; n=21; Fungi/Metazoa group|Rep: DNA-directed RNA
polymerase III subunit RPC10 - Homo sapiens (Human)
Length = 108
Score = 36.3 bits (80), Expect = 0.34
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +1
Query: 328 CAKCGYDRMSYATLQLRSADEGQTVFYTC 414
C KC + R + LQ RSADE T FY C
Sbjct: 69 CPKCEHPRAYFMQLQTRSADEPMTTFYKC 97
>UniRef50_Q9DGD2 Cluster: Transcription elongation factor XSII-K1;
n=7; Euteleostomi|Rep: Transcription elongation factor
XSII-K1 - Xenopus laevis (African clawed frog)
Length = 645
Score = 35.9 bits (79), Expect = 0.45
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +1
Query: 256 TISVITNENILHTDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
T I + T G + +++ C KC SY +Q RSADE T F C +C
Sbjct: 585 TQEAIREHQMAKTGGTQTDLLQ--CEKCKKKNCSYNQVQTRSADEPMTTFVLCNEC 638
>UniRef50_Q5UQS8 Cluster: TFII-like transcription factor; n=1;
Acanthamoeba polyphaga mimivirus|Rep: TFII-like
transcription factor - Mimivirus
Length = 173
Score = 35.5 bits (78), Expect = 0.59
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = +1
Query: 193 KAHYEADNYSKMKFQYTIHFNTISVITNENILHTDGPEGPVVERK-CAKCGYDRMSYATL 369
K Y A N + + + N I +I + + + VE K C C + L
Sbjct: 88 KNKYNAYNLAFLNPEELNKDNWIKIIARKQMTEETLNQMATVEWKPCYACKNTSYHFYQL 147
Query: 370 QLRSADEGQTVFYTCIKC 423
Q RSADE T FY C C
Sbjct: 148 QTRSADEPMTTFYICKNC 165
>UniRef50_P27948 Cluster: Transcription factor S-II-related protein;
n=2; African swine fever virus|Rep: Transcription factor
S-II-related protein - African swine fever virus (strain
BA71V) (ASFV)
Length = 243
Score = 35.5 bits (78), Expect = 0.59
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 325 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 432
KC C +Y +Q R+ DE T+F TC KC ++
Sbjct: 205 KCPNCKQRMCTYREVQTRALDEPSTIFCTCKKCGHE 240
>UniRef50_Q8SQU1 Cluster: DNA-directed RNA polymerase II subunit
RPB9; n=1; Encephalitozoon cuniculi|Rep: DNA-directed
RNA polymerase II subunit RPB9 - Encephalitozoon
cuniculi
Length = 108
Score = 35.5 bits (78), Expect = 0.59
Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 2/105 (1%)
Frame = +1
Query: 115 STAFCARCGSILPLLQEFGSV--KCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENIL 288
S FC C ++L ++ ++ C C+ EA ++ + +I + + +
Sbjct: 2 SDRFCKECNNLLYPKEDDNTLFLACKNCEHIQEAKSHRLYVKNFRPKHASIELYARDLV- 60
Query: 289 HTDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
P P V+ C CG+++ Y + D ++FY C +C
Sbjct: 61 --QDPTLPSVKINCGNCGFNKGLYFQPRGGEEDVALSIFYLCCRC 103
>UniRef50_P36958 Cluster: DNA-directed RNA polymerase II subunit
RPB9; n=9; Coelomata|Rep: DNA-directed RNA polymerase II
subunit RPB9 - Drosophila melanogaster (Fruit fly)
Length = 129
Score = 35.5 bits (78), Expect = 0.59
Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 5/121 (4%)
Frame = +1
Query: 94 TESPLSTSTAFCARCGSIL-PLLQEFGSVKCYTCK-AHYEADNYSKMKFQYTIHFNTISV 267
TE P FC C ++L P + + Y C+ Y+ + S + I + I
Sbjct: 10 TEGPGFVGIRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKI-MHEIDE 68
Query: 268 ITNENILHTDGPEGPVVE-RKCAKCGYDRMSYATLQLRSADEGQTVFYTCI--KCKYKET 438
+T+ P P E C KC + + Q R A+E ++Y C C ++ T
Sbjct: 69 LTHIVPDVISDPTLPRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWT 128
Query: 439 E 441
E
Sbjct: 129 E 129
>UniRef50_UPI000155606C Cluster: PREDICTED: similar to ZNRD1,
partial; n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
similar to ZNRD1, partial - Ornithorhynchus anatinus
Length = 359
Score = 35.1 bits (77), Expect = 0.78
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +1
Query: 85 IMSTESPLSTSTAFCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTIS 264
+ ++ S + + FC+ CGSILPL +V C C + ++ + T+ FN +
Sbjct: 282 VTTSASSVLSDLDFCSECGSILPLPGAQDTVTCVRCAFAIDVLDFEGKLVETTVIFNKLG 341
Query: 265 VITNENILHTDGPE--GPV 315
T + PE GPV
Sbjct: 342 A-TAPLAKEEEAPETRGPV 359
>UniRef50_Q91FH5 Cluster: 349L; n=1; Invertebrate iridescent virus
6|Rep: 349L - Chilo iridescent virus (CIV) (Insect
iridescent virus type 6)
Length = 140
Score = 35.1 bits (77), Expect = 0.78
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +1
Query: 325 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 432
KC KCG +R+ + Q RS DE +VF C CK K
Sbjct: 103 KC-KCGSERVFSFSKQTRSGDESTSVFALCSSCKSK 137
>UniRef50_Q6EU09 Cluster: DNA-directed RNA polymerase subunit; n=3;
Oryza sativa|Rep: DNA-directed RNA polymerase subunit -
Oryza sativa subsp. japonica (Rice)
Length = 110
Score = 35.1 bits (77), Expect = 0.78
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
Frame = +1
Query: 124 FCARCGSILPLLQEFGSVK----CYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILH 291
FC CG +L + G + C TC Y +K+ + + + I +++
Sbjct: 3 FCPGCGMLLQIQPATGGNRLRFYCPTCP--YVCPVKNKIVKKARLVKKEVEPIFSDSDAM 60
Query: 292 TDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIK--CKYKETEN 444
+ P+ C +C Y +Q+RSADE + FY C + C++ E+
Sbjct: 61 KNAPKTTTT---CPRCQNGEAYYRQMQIRSADEPMSTFYKCCREECQFDWRED 110
>UniRef50_Q4X1W6 Cluster: DNA-directed RNA polymerase subunit; n=9;
Ascomycota|Rep: DNA-directed RNA polymerase subunit -
Aspergillus fumigatus (Sartorya fumigata)
Length = 128
Score = 35.1 bits (77), Expect = 0.78
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 4/104 (3%)
Frame = +1
Query: 124 FCARCGSIL-PLLQEFGS---VKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILH 291
FC C ++L P + C TC A +Y + + + +T + +
Sbjct: 23 FCRECSNLLYPKEDRVNNRLMFTCRTCHVGEPATSYCVYQNKLNSQVGDTAGVTQD--VG 80
Query: 292 TDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
+D P P + C CG + Q RSA+ G ++Y C C
Sbjct: 81 SD-PTLPRSNKPCPSCGEAEAVFFQSQQRSAETGMKLYYVCCAC 123
>UniRef50_A2RAZ1 Cluster: Complex: hRPC11 is a small; n=5;
Eurotiomycetidae|Rep: Complex: hRPC11 is a small -
Aspergillus niger
Length = 117
Score = 35.1 bits (77), Expect = 0.78
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +1
Query: 337 CGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETEN 444
C DR + LQ+RSADE T F C C + EN
Sbjct: 82 CNGDRAYFFQLQIRSADEPMTTFLKCTTCGARWREN 117
>UniRef50_P23193 Cluster: Transcription elongation factor A protein
1; n=41; Eumetazoa|Rep: Transcription elongation factor
A protein 1 - Homo sapiens (Human)
Length = 301
Score = 35.1 bits (77), Expect = 0.78
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 328 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
C KC +Y +Q RSADE T F C +C
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNEC 294
>UniRef50_Q6GZP4 Cluster: Transcription elongation factor SII; n=3;
Ranavirus|Rep: Transcription elongation factor SII -
Frog virus 3 (FV3)
Length = 92
Score = 34.7 bits (76), Expect = 1.0
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 301 PEGPVVER--KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
P G V E KC CG R+ Q RSADE T+F C +C
Sbjct: 44 PPGKVEEGTVKCPGCGSRRVHALQRQTRSADEPMTLFAMCSEC 86
>UniRef50_Q7QXB3 Cluster: GLP_741_50228_49188; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_741_50228_49188 - Giardia lamblia
ATCC 50803
Length = 346
Score = 34.7 bits (76), Expect = 1.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 325 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 432
+C KC + + Q RSADE T+ YTC C ++
Sbjct: 307 QCKKCKQETVVRLEKQTRSADEATTIEYTCSSCGHR 342
>UniRef50_Q4QAW0 Cluster: Transcription elongation factor, putative;
n=2; Leishmania|Rep: Transcription elongation factor,
putative - Leishmania major
Length = 333
Score = 34.7 bits (76), Expect = 1.0
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = +1
Query: 325 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
KC CG S+ Q RS DE TV TC KC
Sbjct: 294 KCRVCGARDSSWEQRQTRSGDEPMTVIITCNKC 326
>UniRef50_O75764 Cluster: Transcription elongation factor A protein
3; n=21; Eutheria|Rep: Transcription elongation factor A
protein 3 - Homo sapiens (Human)
Length = 348
Score = 34.7 bits (76), Expect = 1.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 325 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
+C+KC +Y +Q RSADE T F C +C
Sbjct: 309 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCNEC 341
>UniRef50_UPI00006CB60F Cluster: hypothetical protein
TTHERM_00444250; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00444250 - Tetrahymena
thermophila SB210
Length = 108
Score = 34.3 bits (75), Expect = 1.4
Identities = 36/112 (32%), Positives = 46/112 (41%), Gaps = 10/112 (8%)
Frame = +1
Query: 124 FCARCGSILPLLQEFGS---VKCYTCKAHY------EADNYSKMKFQYTIHFNTISVITN 276
FC C + L ++Q G C TC Y E YS+M TIH +
Sbjct: 3 FCPLCANAL-IIQNVGGNNRFSCRTCTYFYPLLKKIETVTYSRMVKDDTIH----DISLQ 57
Query: 277 ENILHTDGPEGPVVERKCAKCG-YDRMSYATLQLRSADEGQTVFYTCIKCKY 429
+ L TD ++ C K G Y R+ Q RS DEGQT Y C C +
Sbjct: 58 KESLQTDKD---MICPACEKRGAYIRLE----QDRSLDEGQTQHYICKNCSH 102
>UniRef50_Q6P0U5 Cluster: Zgc:77732; n=4; Clupeocephala|Rep:
Zgc:77732 - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 409
Score = 34.3 bits (75), Expect = 1.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 325 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
+C KC +Y +Q RSADE T F C +C
Sbjct: 370 QCGKCKKKNCTYNQVQTRSADEPMTTFVLCNEC 402
>UniRef50_Q4TIF2 Cluster: Chromosome undetermined SCAF2195, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF2195,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 255
Score = 34.3 bits (75), Expect = 1.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 325 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
+C KC +Y +Q RSADE T F C +C
Sbjct: 218 QCGKCKKKNCTYNQVQTRSADEPMTTFVLCNEC 250
>UniRef50_Q919I9 Cluster: CUN088 putative lef-5 late expression
factor, similar to AcMNPV ORF99; n=1; Culex nigripalpus
NPV|Rep: CUN088 putative lef-5 late expression factor,
similar to AcMNPV ORF99 - Culex nigripalpus NPV
Length = 266
Score = 33.9 bits (74), Expect = 1.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 337 CGYDRMSYATLQLRSADEGQTVFYTCIKCKY 429
C ++ ++Q RS DE T++ CI CKY
Sbjct: 231 CKHENTEQISVQQRSGDEAATIYVRCIDCKY 261
>UniRef50_Q54YG9 Cluster: RNA polymerase II elongation factor; n=1;
Dictyostelium discoideum AX4|Rep: RNA polymerase II
elongation factor - Dictyostelium discoideum AX4
Length = 319
Score = 33.9 bits (74), Expect = 1.8
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 325 KCAKCGYDRMSYATLQLRSADEGQTVFYTC 414
+C KC + +Y LQ RSADE T F C
Sbjct: 278 QCGKCKQRKCTYTQLQTRSADEPPTTFVKC 307
>UniRef50_Q4QDH9 Cluster: RNA polymerase III C11 subunit, putative;
n=3; Leishmania|Rep: RNA polymerase III C11 subunit,
putative - Leishmania major
Length = 151
Score = 33.9 bits (74), Expect = 1.8
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 337 CGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 432
C + + +Q+RSADE TVF+ C++C ++
Sbjct: 116 CQSTKAYFIQIQMRSADEPATVFFKCVECGHQ 147
>UniRef50_Q15560 Cluster: Transcription elongation factor A protein
2; n=55; Coelomata|Rep: Transcription elongation factor
A protein 2 - Homo sapiens (Human)
Length = 299
Score = 33.9 bits (74), Expect = 1.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 328 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
C KC +Y +Q RS+DE T F C +C
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVCNEC 292
>UniRef50_Q9GZ09 Cluster: Transcription elongation factor TFIIS;
n=2; Moneuplotes crassus|Rep: Transcription elongation
factor TFIIS - Euplotes crassus
Length = 328
Score = 33.5 bits (73), Expect = 2.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 328 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKY 429
C KC + ++ Q RSADE T F C+ C +
Sbjct: 291 CEKCKSKKTTFYEQQTRSADEPMTTFVQCLMCSH 324
>UniRef50_Q5CPB7 Cluster: DNA-directed RNA polymerase 2 subunit;
n=2; Cryptosporidium|Rep: DNA-directed RNA polymerase 2
subunit - Cryptosporidium hominis
Length = 167
Score = 33.5 bits (73), Expect = 2.4
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 286 LHTDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
LH D G +E C CG++ + L R E T+ + C+ C
Sbjct: 68 LHQDPTLGRTLEWNCRGCGHNVAVFFQLPERVCSEAMTLVFVCVSC 113
>UniRef50_UPI0000161EFD Cluster: Transcription factor SII homolog;
n=1; Lymphocystis disease virus 1|Rep: Transcription
factor SII homolog - Lymphocystis disease virus 1
Length = 89
Score = 33.1 bits (72), Expect = 3.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 325 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 432
KC KC ++ +Q RSADE ++ C C YK
Sbjct: 51 KCRKCKKTKIFSTHVQTRSADEPMSLIAMCYSCGYK 86
>UniRef50_Q5DAX2 Cluster: SJCHGC05867 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC05867 protein - Schistosoma
japonicum (Blood fluke)
Length = 126
Score = 33.1 bits (72), Expect = 3.2
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Frame = +1
Query: 124 FCARCGSILPLLQEFGS----VKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILH 291
FC+ C ++L ++ + C C EADN + + +++I + ++H
Sbjct: 17 FCSECNNMLYPKEDKRTKTLFYACRNCDYSQEADNPCVYINKLEQEVDELALIVPD-VVH 75
Query: 292 TDGPEGPVVERK-CAKCGYDRMSYATLQLRSADEGQTVFYTC--IKCKYKETE 441
P P E C +CG + Q A+E ++Y C ++C +K TE
Sbjct: 76 D--PTLPRTEDHICRRCGKQEAVFFQSQTLKAEENMRLYYVCTNVECLHKWTE 126
>UniRef50_P27999 Cluster: DNA-directed RNA polymerase II subunit
RPB9; n=8; Ascomycota|Rep: DNA-directed RNA polymerase
II subunit RPB9 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 122
Score = 33.1 bits (72), Expect = 3.2
Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Frame = +1
Query: 112 TSTAFCARCGSIL-PLLQEFGSVKCYTCKA-HYEADNYSKMKFQYTIHFNTISVITNENI 285
T+ FC C ++L P + + + C+ Y + S + +++ + N
Sbjct: 2 TTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQD 61
Query: 286 LHTDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKY 429
+ +D P P +R+C KC + Q R D +F+ C+ C +
Sbjct: 62 IGSD-PTLPRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSH 108
>UniRef50_A0EDT1 Cluster: Chromosome undetermined scaffold_90, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_90,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 317
Score = 32.7 bits (71), Expect = 4.2
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 322 RKCAKCGYDRMSYA-TLQLRSADEGQTVFYTCIKCKYK 432
++C +C + + T Q+R ADE T+FY C C+++
Sbjct: 277 QECPRCHNNYLYIIETKQIRRADEPATIFYECFACQHR 314
>UniRef50_Q16L70 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 286
Score = 32.3 bits (70), Expect = 5.5
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 280 NILHTDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQT 399
NI + D P PV+++ C+K GY +S T++ + + T
Sbjct: 76 NITYYDKPSHPVLQKVCSKRGYGSLSATTIRFKFDEVSST 115
>UniRef50_Q98TK0 Cluster: RNA polymerase III smallest subunit; n=1;
Platichthys flesus|Rep: RNA polymerase III smallest
subunit - Platichthys flesus (European flounder)
Length = 87
Score = 31.9 bits (69), Expect = 7.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 328 CAKCGYDRMSYATLQLRSADEGQTVFY 408
C CG+ R + +Q RSADE T FY
Sbjct: 60 CPTCGHLRAYFMQIQTRSADEPMTTFY 86
>UniRef50_O67640 Cluster: Putative uncharacterized protein; n=1;
Aquifex aeolicus|Rep: Putative uncharacterized protein -
Aquifex aeolicus
Length = 678
Score = 31.9 bits (69), Expect = 7.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 103 PLSTSTAFCARCGSILPLLQEFGSVKCYTCKAHY 204
P S A C CGS+L +E G + C K HY
Sbjct: 454 PRCESLAECPECGSLLTFSKEKGEIFCPRVKKHY 487
>UniRef50_Q4KSC5 Cluster: Transcription elongation factor SII; n=2;
Infectious spleen and kidney necrosis virus|Rep:
Transcription elongation factor SII - Orange-spotted
grouper iridovirus
Length = 73
Score = 31.5 bits (68), Expect = 9.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 328 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
C CG + T+Q R DE +VF C+ C
Sbjct: 36 CRACGNAKTYTLTMQTRGGDEALSVFVCCVAC 67
>UniRef50_A6P9S0 Cluster: Primosomal protein N'; n=6;
Shewanella|Rep: Primosomal protein N' - Shewanella
sediminis HAW-EB3
Length = 742
Score = 31.5 bits (68), Expect = 9.7
Identities = 16/64 (25%), Positives = 25/64 (39%)
Frame = +1
Query: 127 CARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHTDGPE 306
C RC + + Q G ++C+ C HY + + NIL + P+
Sbjct: 458 CDRCDAFFTVHQSLGEIRCHHCGNHYAIPKQCHNCGSTMLMGQGVGTEQLANILEKEFPK 517
Query: 307 GPVV 318
PVV
Sbjct: 518 YPVV 521
>UniRef50_A4V735 Cluster: Putative uncharacterized protein; n=1;
Pseudomonas fluorescens SBW25|Rep: Putative
uncharacterized protein - Pseudomonas fluorescens SBW25
Length = 121
Score = 31.5 bits (68), Expect = 9.7
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 118 TAFCARCGSILPLLQEFGSVKCYTC 192
T+ C R GS L + QE G V C TC
Sbjct: 27 TSSCGRTGSTLAITQERGQVSCKTC 51
>UniRef50_A1W8N7 Cluster: Putative uncharacterized protein; n=1;
Acidovorax sp. JS42|Rep: Putative uncharacterized
protein - Acidovorax sp. (strain JS42)
Length = 436
Score = 31.5 bits (68), Expect = 9.7
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +1
Query: 97 ESPLSTSTAFCARCGSILPLLQEFGSVKCYTCKAHYE 207
E P + T FC GS+LP L+ G T KA YE
Sbjct: 53 EDPAQSETCFCRSLGSMLPRLELLG-YSLATVKAEYE 88
>UniRef50_Q4DRW2 Cluster: Transcription elongation factor, putative;
n=3; Trypanosoma|Rep: Transcription elongation factor,
putative - Trypanosoma cruzi
Length = 243
Score = 31.5 bits (68), Expect = 9.7
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 328 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 432
C C S+ Q RSADE TVF C C +K
Sbjct: 205 CPSCKARDCSWTQKQTRSADEPMTVFCICNVCDHK 239
>UniRef50_A7AQR2 Cluster: Glycerol-3-phosphate-acyltransferase,
putative; n=1; Babesia bovis|Rep:
Glycerol-3-phosphate-acyltransferase, putative - Babesia
bovis
Length = 593
Score = 31.5 bits (68), Expect = 9.7
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 236 NTQYISIL-YL*SQMRIYYILMVLRVQLWRENALNAVTTECHMQL 367
N +Y + L L Q+ I+ ++++ ++ +WREN +TT +QL
Sbjct: 488 NLRYFNELPMLLRQLHIFPLILMGKINVWRENERELITTRTELQL 532
>UniRef50_A6RCK2 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 104
Score = 31.5 bits (68), Expect = 9.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 310 PVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
P + C CG + + Q RSA+ G ++Y C C
Sbjct: 62 PRSNKLCPSCGENEAVFFQSQQRSAETGMKLYYVCCTC 99
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 431,266,270
Number of Sequences: 1657284
Number of extensions: 7951394
Number of successful extensions: 20223
Number of sequences better than 10.0: 145
Number of HSP's better than 10.0 without gapping: 19586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20193
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26030843530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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