Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P07_F_C05
(470 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subuni... 75 7e-15
SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex sub... 52 4e-08
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz... 42 5e-05
SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subun... 32 0.038
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 25 4.4
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha... 25 5.8
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 25 7.7
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 25 7.7
>SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subunit
Rpa12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 119
Score = 74.5 bits (175), Expect = 7e-15
Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 4/115 (3%)
Frame = +1
Query: 115 STAFCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTI--SVITNENIL 288
S FC+ CG++L + C C++ Y ++ ++ + + + ++ +I+
Sbjct: 6 SLIFCSECGNLLESTTAQWTT-CDQCQSVYPSEQFANLVVETKSSASAFPSALKLKHSIV 64
Query: 289 HTDGP--EGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 447
+ E +E KC KCG D M++ TLQLRSADEG TVFY C +C YK + N+
Sbjct: 65 QVESQKEEAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYECPRCAYKFSTNN 119
>SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex
subunit Rpc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 52.0 bits (119), Expect = 4e-08
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Frame = +1
Query: 124 FCARCGS-ILPLLQEFG--SVKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILHT 294
FC CG+ ++ + E G + C TC H+ + + ++ V+ E +
Sbjct: 3 FCPTCGNHLIVAVDEEGRNAFDCRTCPYHFPISTFLYSRHEFA-QKEVDDVLGGEEAFES 61
Query: 295 DGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETEN 444
+ E KC +R + LQ+RSADE + FY C KCK++ EN
Sbjct: 62 NQQTEVTCEN--TKCDNNRAYFFQLQIRSADEPMSTFYRCTKCKFQWREN 109
>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 41.9 bits (94), Expect = 5e-05
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 268 ITNENILHTDG--PEGPVVER-KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
+ EN+ H G P+ V + C KC ++SY +Q RSADE T F C C
Sbjct: 232 LEQENLFHAQGAKPQKAVTDLFTCGKCKQKKVSYYQMQTRSADEPMTTFCECTVC 286
>SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subunit
Rpb9 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 113
Score = 32.3 bits (70), Expect = 0.038
Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 2/104 (1%)
Frame = +1
Query: 124 FCARCGSIL-PLLQEFGSVKCYTCK-AHYEADNYSKMKFQYTIHFNTISVITNENILHTD 297
+C C ++L P + V C+ Y + +++ + + + T + TD
Sbjct: 6 YCIECNNMLYPREDKVDRVLRLACRNCDYSEIAATSKVYRHELQSSNVENTTVSHDASTD 65
Query: 298 GPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKY 429
P P +++C +C + R D T+ Y C+ C +
Sbjct: 66 -PTLPRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGF 108
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 25.4 bits (53), Expect = 4.4
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +1
Query: 112 TSTAFCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMK 231
TS C R S +L C CK+ EA+ K+K
Sbjct: 268 TSVTSCLRSFSASEMLSSKNKFHCDVCKSLQEAEKRMKIK 307
>SPBC651.03c |gyp10||GTPase activating protein
Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 373
Score = 25.0 bits (52), Expect = 5.8
Identities = 10/41 (24%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -2
Query: 250 NVLCIEISFYYNYQPHNVLYKCS--ISRSQTLVARVIWTHS 134
+V+C F+ + P V+Y C+ + ++T + ++W +S
Sbjct: 207 SVVCRLFDFFISSHPLTVVYTCAQVVLDNRTSIIELLWDNS 247
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 24.6 bits (51), Expect = 7.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 463 YKAAFRSFQFPCICTLYMC 407
YK +FR F+F C +Y C
Sbjct: 332 YKKSFRWFRFSCCDRVYPC 350
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 24.6 bits (51), Expect = 7.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 109 STSTAFCARCGSILPLLQEFGSVKCYTC 192
S +CA CG LPL ++ KC C
Sbjct: 488 SLGAQWCAHCGFFLPLRRK-DCFKCVEC 514
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,884,104
Number of Sequences: 5004
Number of extensions: 37474
Number of successful extensions: 96
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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