Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P07_F_C05
         (470 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81035-6|CAB02739.1|  119|Caenorhabditis elegans Hypothetical pr...    83   7e-17
Z54216-1|CAA90943.1|  308|Caenorhabditis elegans Hypothetical pr...    42   3e-04
AC024214-2|AAF36076.1|  108|Caenorhabditis elegans Hypothetical ...    38   0.005
AC024880-8|AAK85514.1|  167|Caenorhabditis elegans Hypothetical ...    35   0.026
AF026215-9|AAB71318.2|  319|Caenorhabditis elegans Hypothetical ...    29   1.7  
AF016451-1|AAB66002.2|  294|Caenorhabditis elegans Serpentine re...    29   2.2  
Z92825-5|CAE17713.2|  191|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AY204174-1|AAO39178.1|  344|Caenorhabditis elegans nuclear recep...    27   5.1  
AY204173-1|AAO39177.1|  369|Caenorhabditis elegans nuclear recep...    27   5.1  
AY204172-1|AAO39176.1|  234|Caenorhabditis elegans nuclear recep...    27   5.1  
AF043694-2|AAT27251.1|  387|Caenorhabditis elegans Nuclear hormo...    27   5.1  
AF043694-1|AAC24283.1|  412|Caenorhabditis elegans Nuclear hormo...    27   5.1  
Z68303-8|CAA92640.2|  273|Caenorhabditis elegans Hypothetical pr...    27   6.8  
DQ407523-1|ABD85015.1|  856|Caenorhabditis elegans OGA-1c protein.     27   6.8  
AC006777-1|ABB51174.1|  424|Caenorhabditis elegans Nuclear hormo...    24   7.8  
Z92804-1|CAB07252.1|  338|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>Z81035-6|CAB02739.1|  119|Caenorhabditis elegans Hypothetical
           protein C15H11.8 protein.
          Length = 119

 Score = 83.4 bits (197), Expect = 7e-17
 Identities = 48/120 (40%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
 Frame = +1

Query: 106 LSTSTAFCARCGSILPL-LQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNEN 282
           LS    FC  CG+IL L  Q   +V C  C   +      K +    +  + +  I    
Sbjct: 6   LSYDDDFCGYCGAILELPAQAPATVSCKVCSTRWAV----KERVDQVV--SRVEKIYERT 59

Query: 283 ILHTDGPEGP-----VVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 447
           +  TDG E       VV+  C KCG+ + SY+T+Q RSADEGQTVFYTC+KCK K+ E S
Sbjct: 60  VADTDGIENDESADAVVDHICTKCGHSKASYSTMQTRSADEGQTVFYTCLKCKKKDIEYS 119


>Z54216-1|CAA90943.1|  308|Caenorhabditis elegans Hypothetical
           protein T24H10.1 protein.
          Length = 308

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +1

Query: 325 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 423
           KC KCG    +Y  LQ RS+DE  T F  C++C
Sbjct: 269 KCGKCGKKNCTYTQLQTRSSDEPMTTFVFCLEC 301


>AC024214-2|AAF36076.1|  108|Caenorhabditis elegans Hypothetical
           protein Y77E11A.6 protein.
          Length = 108

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 313 VVERKCAKCGYDRMSYATLQLRSADEGQTVFYTC 414
           V +  C  C + R  +  LQ RSADE  T+FY C
Sbjct: 64  VTDETCPVCSHGRAYFMQLQTRSADEPSTIFYRC 97


>AC024880-8|AAK85514.1|  167|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.5 protein.
          Length = 167

 Score = 35.1 bits (77), Expect = 0.026
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
 Frame = +1

Query: 124 FCARCGSIL-PLLQEFGSVKCYTCK--AHYEADNYSKMKFQYTIH-FNTISVITNENILH 291
           FC  C ++L P   +   V  Y+C+   H E      +     +H  + ++ I  + I+H
Sbjct: 58  FCPECNNMLYPREDKESRVLMYSCRNCEHREVAANPCIYVNKLVHEIDELTQIVGD-IIH 116

Query: 292 TDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIK--CKYKETE 441
            D       E +C  CG  +  +   Q + A+E   ++Y C    C+++ TE
Sbjct: 117 -DPTLPKTEEHQCPVCGKSKAVFFQAQTKKAEEEMRLYYVCASQDCQHRWTE 167


>AF026215-9|AAB71318.2|  319|Caenorhabditis elegans Hypothetical
           protein F09G2.2 protein.
          Length = 319

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 89  CPLKARYQLVQRFVLAVGPYYPCYK 163
           CP ++  + + +F LA+ PY  CY+
Sbjct: 287 CPFESARRAIDKFRLALSPYLSCYR 311


>AF016451-1|AAB66002.2|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein38 protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -3

Query: 87  YFLSICY-TKTYFFFTIMINSLL 22
           YFL ICY   TYF F I +N  L
Sbjct: 81  YFLMICYDASTYFHFIISLNRFL 103


>Z92825-5|CAE17713.2|  191|Caenorhabditis elegans Hypothetical
           protein C13C4.7 protein.
          Length = 191

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +1

Query: 271 TNENILHTDGPEGPVVERKCAK--CGYDRMSYATLQLRSADEGQT 399
           TNE ++H DG    VV   C K   G D  SY  +   S  + +T
Sbjct: 22  TNETVVHHDGRLWDVVIETCDKDGAGTDAASYLKVFYESGHDSET 66


>AY204174-1|AAO39178.1|  344|Caenorhabditis elegans nuclear receptor
           NHR-64 protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 199 HYEADNYSKMKFQYTIHFNTISVITNENILHTDGPEGPVVER 324
           H+ A +        +IH +    +TNE  LH D P+ P + R
Sbjct: 168 HFSAQHLVMCAAFRSIHLSDAVWLTNETCLHKDSPKIPDMNR 209


>AY204173-1|AAO39177.1|  369|Caenorhabditis elegans nuclear receptor
           NHR-64 protein.
          Length = 369

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 199 HYEADNYSKMKFQYTIHFNTISVITNENILHTDGPEGPVVER 324
           H+ A +        +IH +    +TNE  LH D P+ P + R
Sbjct: 193 HFSAQHLVMCAAFRSIHLSDAVWLTNETCLHKDSPKIPDMNR 234


>AY204172-1|AAO39176.1|  234|Caenorhabditis elegans nuclear receptor
           NHR-64 protein.
          Length = 234

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 199 HYEADNYSKMKFQYTIHFNTISVITNENILHTDGPEGPVVER 324
           H+ A +        +IH +    +TNE  LH D P+ P + R
Sbjct: 58  HFSAQHLVMCAAFRSIHLSDAVWLTNETCLHKDSPKIPDMNR 99


>AF043694-2|AAT27251.1|  387|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 64, isoform b protein.
          Length = 387

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 199 HYEADNYSKMKFQYTIHFNTISVITNENILHTDGPEGPVVER 324
           H+ A +        +IH +    +TNE  LH D P+ P + R
Sbjct: 211 HFSAQHLVMCAAFRSIHLSDAVWLTNETCLHKDSPKIPDMNR 252


>AF043694-1|AAC24283.1|  412|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 64, isoform a protein.
          Length = 412

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 199 HYEADNYSKMKFQYTIHFNTISVITNENILHTDGPEGPVVER 324
           H+ A +        +IH +    +TNE  LH D P+ P + R
Sbjct: 236 HFSAQHLVMCAAFRSIHLSDAVWLTNETCLHKDSPKIPDMNR 277


>Z68303-8|CAA92640.2|  273|Caenorhabditis elegans Hypothetical
           protein ZK809.7 protein.
          Length = 273

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +1

Query: 100 SPLSTSTAFCARCG--SILPLL-QEFGSVKCYTCKA 198
           S + +S   C  C   S++P++ Q+ G V CYTC A
Sbjct: 207 SSIGSSDIECVVCDKPSVIPMVGQKCGHVACYTCIA 242


>DQ407523-1|ABD85015.1|  856|Caenorhabditis elegans OGA-1c protein.
          Length = 856

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 96  SGHYFLSICYTKTYFFFTIMINSLLTY 16
           +GH    +CY   +F  T+  N L+TY
Sbjct: 690 TGHKVRPVCYASAHFDGTLFSNFLITY 716


>AC006777-1|ABB51174.1|  424|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 110, isoform b protein.
          Length = 424

 Score = 23.8 bits (49), Expect(2) = 7.8
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 106 LSTSTAFCARCGSILPLLQEFGSVKCYTC 192
           +  ST FC+   +      E G++KC  C
Sbjct: 1   MDDSTVFCSSLQTDPVSASELGAIKCQVC 29



 Score = 21.4 bits (43), Expect(2) = 7.8
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +1

Query: 166 FGSVKCYTCKAHYEADNYSKMKFQYT 243
           FG+  C  C A +   + SK K  ++
Sbjct: 38  FGAYTCRACAAFFRIVSISKSKCHFS 63


>Z92804-1|CAB07252.1|  338|Caenorhabditis elegans Hypothetical
           protein K05D4.2 protein.
          Length = 338

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 247 VLCIEISFYYNYQPHNVLYK 188
           VLC+ +  Y+ YQ +N LYK
Sbjct: 216 VLCLILLTYFGYQTYNHLYK 235


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,614,490
Number of Sequences: 27780
Number of extensions: 216745
Number of successful extensions: 635
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)